Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq129 179 3e-39 seq3 102 6e-16 seq46 93.3 3e-13 seq55 89.7 4e-12 seq21 87.8 1e-11 >seq129 Length=2073869 Score = 179 bits (198), Expect = 3e-39 Identities = 898/1414 (64%), Gaps = 26/1414 (2%) Strand=Plus/Minus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 |||||| ||||| |||||||| |||||||| | || || || || || |||||||| || Sbjct 760095 GGCAGTAACATTGAGAATACCGTTGGCATCGATGTCGAAGGTCACCTCGATTTGAGGAAC 760036 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 ||||| | ||||| ||||| || || | || ||||| || || || Sbjct 760035 TCCTCTGGGTGCAGGAGGGATTCCGGTCAGTTCGAAGCGGCCCAGCAGGTTGTTGTCACG 759976 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || || || || |||||| | | ||||| || | | || || || || || Sbjct 759975 TGTCAAGGCGCGCTCGCCCTCGTACACCTGGATCAGCACGCCGGGCTGGTTGTCCGAGTA 759916 Query 517438 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || || || | | | | || || || || | ||| | | || | ||| Sbjct 759915 GGTGGTGAAGATTTGTGTCTGCTTGGTGGGGATGGTGGAGTTGCGCTTGATCAGGACGGT 759856 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | ||| || ||||| || | || || || || |||| || || | || | || Sbjct 759855 CATCACACCGCCGGCTGTCTCCAGCCCCAGGGACAGGGGAGCCACGTCCAATAAAAGAAG 759796 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 | || | |||||| | | ||| | | ||| ||||| || | ||||| ||||| Sbjct 759795 GTCCTGTACCTTTTCAGACTTGTCACCCATCAAAATGGCTGCCTGCACGGCAGCCCCATA 759736 Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TG 517676 ||| || ||||||||||| || | ||| || || | || ||||| | | || Sbjct 759735 TGCTACTGCTTCATCAGGGTTGATGCTTTTGTTAAGGTCACGGCCGTTGAAGTAGTCCTG 759676 Query 517677 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 || || | | ||||| || || || | || || || || || ||||| || || | Sbjct 759675 AAGCAACCTCTGC-ACCTTGGGGATGCGCGTGGAGCCCCCTACCAAAACAATGTCGTGGA 759617 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC-AAG--ACCCG 517793 | | |||||||| || | |||| | | |||||||||| ||||| ||| |||| Sbjct 759616 TTTTAGCTTTATCCATCTTGGCATCCCGAAGAGCTTTTTCAACAGGTTCCAAGGTACCC- 759558 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA 517852 ||||||||||||| ||| || ||||| ||| ||||| || || ||| | || || Sbjct 759557 --CTAAACAAGTCTGCACACAGCTCTTCAAATCGGGCTCTGGT--GATGGACGTGTAGAA 759502 Query 517853 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 || || || || | | ||||| | || | | | || || || || || | Sbjct 759501 GTCGATGCCCTCATAAAGTGAATCGATCTCCAGGTTGGCCTGCGTGCTGGACGACAGCGT 759442 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGAT 517967 || || || || || || || || | || | || | ||| || | ||| |||| Sbjct 759441 GCGCTTGGCCCGCTCGCACGCCGTGCGCAGCCGCCGCACGGCGCGCTTGTTCTGGCTGAT 759382 Query 517968 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 518027 || | || | || |||||||| || || || | | || || || || | Sbjct 759381 G----TCCTTCTTGTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCGGTTGT 759326 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 | || || || || |||| | || | || | ||| || | || | ||| | || | Sbjct 759325 CGAAGTCCTCGCCGCCCAGGTGCGTGTCGCCCGCCGTGGCCTTCACCTCGAAGATGCCGT 759266 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | || | | || | | |||||| |||||| ||||||| |||||| || || |||| Sbjct 759265 CGTCGATGGTCAGGATGGACACATCAAAGGTTCCTCCACCCAAATCAAAGATCAGGACAT 759206 Query 518148 -TCATT-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 || | || || | | ||| ||| | ||||||||||| |||||||| || ||||| Sbjct 759205 GTCGCTCTCCCTGACCAGCTTT--ATCTAAACCATACGCAATGGCAGCAGCTGTGGGTTC 759148 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 ||| || ||||| | ||||| || || ||||| |||||||| || ||||| || | Sbjct 759147 ATTGATGATTCTAAGCACATTGAGTCCTGCAATCACACCTGCATCCTTTGTGGCCTGGCG 759088 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAAT 518325 || || ||||| ||||| || || || || || || || | || ||| | || | Sbjct 759087 CTGCGAGTCGTTGAAATAGGCTGGCACTGTGATCACAGCGTTGGTCACTGGGTAGCCCAA 759028 Query 518326 ATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385 | |||| || || | ||||| || | | | ||| || || || | || ||| | Sbjct 759027 AAAAGCCTCAGCGGTCTCCTTCATCTTGGTGAGCACCATGGACGAGATCTCCTCCGGGTA 758968 Query 518386 -ATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444 | | || | | | ||| ||| || || | | || || || |||| | Sbjct 758967 GAAAGCTTTTTGCTCCCCTTT-ATAAGAAACCAGCACCTTGGGCTTGCCCCCTTCATTGA 758909 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 | |||| || ||||| |||||| |||||||| ||| | |||||||| | ||| | Sbjct 758908 TCACTTGGAAAGGCCAAAGTTTCATGTCTGATTGCACAACAGGATCATTAAACTTTCTGC 758849 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 | |||| ||||| |||||||| | ||| || ||||| || || | || | |||| Sbjct 758848 CGATTAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCCACCTGGTTCTTGG 758789 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 | || || || |||||| | || || || || || | || || || || ||||| | Sbjct 758788 CCGCGTCGCCGATCAGACGCTCCGTGTCCGTGAAGGCCACGTAGCTGGGCGTGGTGCGGT 758729 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACC 518658 | || || || || || || || || || || || Sbjct 758728 TGCCCTGGTCGTTGGCGATGATCTCCACCTTGCC 758695 >seq3 Length=63406555 Score = 102 bits (112), Expect = 6e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||||||||| | | | || ||||| || ||||| |||| |||||||| | Sbjct 58826683 TCCATCTTCAACTGTGAGGATAGACACATCGAACGTGCCACCTCCCAGGTCAAAAATCAC 58826624 Query 518143 TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 ||||| |||| || || || || || ||||| |||| ||||||||||||||| Sbjct 58826623 CACATTTTTTTCAGCCTCAACCTTCTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGG 58826564 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||||| || || | | |||||| ||||||||||| |||| || ||||| ||||| || Sbjct 58826563 CTCATTGATGATCCAAAGAACATTTAGACCAGCAATGGTTCCAGCGTCTTTGGTGGCCTG 58826504 Query 518263 TCTTTGTGAATCGTTAAAATA 518283 | || || || || || || Sbjct 58826503 ACGCTGAGAGTCATTGAAGTA 58826483 >seq46 Length=14607294 Score = 93.3 bits (102), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || |||| |||||||| ||||| ||||| || ||| | || || ||| | Sbjct 14417593 TGTACACTTATCCTGACTGAGGGAGACTCAGCCAAAACTTTAGCTGTTTCAGGCCTTGGT 14417534 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 ||| |||| ||||| | ||||| || ||||| |||||||||||| | | |||||| | Sbjct 14417533 GTTGTTGGTAGAGACAAATATGGGGTCTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 14417474 Query 635561 GATGCTAGTCCTAA 635574 || ||| || ||| Sbjct 14417473 GAAGCTTCTCATAA 14417460 >seq55 Length=13449054 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || || || ||||| ||||| ||||||||| | ||| || | || ||||||| Sbjct 5705557 TAGCTACCATTGCTTTTGGAATGGGCATTAATAAAGCTGATATTCGCAAAGTCATTCATT 5705616 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 | || |||||||| | || ||| ||||| || |||||||||||||| || || |||| Sbjct 5705617 ACGGTACTCCCAAGGAAATGGAATCCTATTACCAGGAAATTGGTAGAGCTGGCCGGGATG 5705676 Query 367118 GA 367119 || Sbjct 5705677 GA 5705678 >seq21 Length=30942271 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || ||||| |||| ||||||||||||||| || || || || || | |||| Sbjct 873196 TTCTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCGTTGATGATCCTAAGAACA 873137 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| || || |||| || ||||| ||||| || | || || ||||| || || Sbjct 873136 TTGAGACCCGCGATGGTTCCAGCGTCTTTGGTGGCCTGCCGCTGAGAGTCGTTGAAGTAG 873077 Query 518285 GCAGGAACAGT 518295 || || || || Sbjct 873076 GCGGGCACTGT 873066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780305275653226