Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq40 95.1 1e-14 >seq40 Length=19049039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || || |||| |||||||| |||| |||| | ||| || || || Sbjct 15941924 CTCATCTTTGCTGGTATATTCTACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCC 15941865 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 | |||| ||||| ||||| ||| || | ||| ||||||||||||||||| || || Sbjct 15941864 AAGGTTCTGCTGGTTGCTCTTGCGGTTACAAGAATCTTTGTAGAGCATGTAGGGGGTGCC 15941805 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||||||||||| |||| || || || | ||||| Sbjct 15941804 TGTCTCCGTCTGAGACTCGATGATAGCGTACCACA 15941770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589903947626040