Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq117 87.8 1e-12 seq129 86.0 5e-12 >seq117 Length=2603576 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 802 TGAGAGGACATGTCTCTAGCGGTCCAGGTCCTGAGATCTTCATTCAAAGAAATGTAGTCC 861 |||| | |||||| |||||||||| | || || ||||||| | | ||||||| Sbjct 66270 TGAGCCGCCATGTCGGCCGCGGTCCAGGAGCGCAGGTCCTCATTCAGGGCGAGGTAGTCC 66329 Query 862 CTGCCATCATAGGCCTGTTGACAGTAGCCTCGAAGGAGGGTTCCATCCGGCCCCACAACA 921 ||||||||||||| | || ||||| || || |||||| || ||| ||| || | Sbjct 66330 TTGCCATCATAGGCGTCCTGCCAGTACCCGCGGAGGAGGAGCCCGTCCTCCCCGACCTCG 66389 Query 922 CAGCCGGACATCCATTGGAGGGTATG 947 |||||||||||||| |||| ||| || Sbjct 66390 CAGCCGGACATCCACTGGATGGTGTG 66415 >seq129 Length=2073869 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/191 (70%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| |||||| || || || | ||||| | | ||| || | || |||| Sbjct 1110860 CCTCATGTTGTACATGGCACGTGTAACTCTGCTCCTCTCCAGAAGGCACCTGAATAGCTG 1110919 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| |||||| || ||| | | | Sbjct 1110920 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 1110979 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| ||||| |||||| || | || |||||| || |||||||| Sbjct 1110980 TCAGGTCCTC----CCCATCTTGGTGCCAGGTGAGTGTGATGTCCTTGGGGTAGAAGCCG 1111035 Query 525 GTGGCCCAACA 535 |||||| || Sbjct 1111036 AGGGCCCAGCA 1111046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397696683743976