Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq42 129 1e-24 seq67 127 5e-24 seq49 123 6e-23 seq17 120 7e-22 seq6 116 8e-21 seq21 84.2 5e-11 >seq42 Length=18384968 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| |||| ||||| | ||||| || Sbjct 13800107 ACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCC 13800048 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| | || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 13800047 AGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 13799988 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||||| || ||||| | ||||| Sbjct 13799987 ATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTG 13799928 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || |||||||| | ||||| Sbjct 13799927 CCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq67 Length=9509266 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || ||||| |||||| |||| || ||||| |||||||| | | | ||| Sbjct 6398373 AGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGG 6398314 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || || ||||| |||| ||| || ||||||||||| ||||| Sbjct 6398313 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCC 6398254 Query 195043 TTGTCTTGAATTTTTTGCTT-GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || | |||| |||| || || || || || ||||| || || || ||||| Sbjct 6398253 TTATCCTGGA-TTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGT 6398195 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || || || | ||||| Sbjct 6398194 GATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq49 Length=14824766 Score = 123 bits (136), Expect = 6e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 || |||| || |||||||| || || || ||||| || | || || | || ||||| | Sbjct 11086303 CAGGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCA 11086244 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || || | Sbjct 11086243 GCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGA 11086184 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || |||||| || || |||||||| |||||| || ||||| | ||||| | Sbjct 11086183 TCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGC 11086124 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||| || || ||||| | ||||| Sbjct 11086123 CAGTCAGGGTCTTCACGAAGATCTGCAT 11086096 >seq17 Length=35549867 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||||| || || || ||||||||||| || |||| ||||| || | | | ||| Sbjct 25101815 GAGTCTCAGCACCAGATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCG 25101874 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| |||||||| || || ||| | |||| ||| || || |||||||||||||| Sbjct 25101875 GCCATCTTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTC 25101934 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || ||||| || || | || || || || || || | |||||||| Sbjct 25101935 CTTTTCCTGGATTTTGGCTTTTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGT 25101994 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||| || ||||| | ||||| Sbjct 25101995 GATGGTCTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 25102033 >seq6 Length=51880498 Score = 116 bits (128), Expect = 8e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||||| || ||||| ||||||||||| || ||||| ||||| || | |||| Sbjct 32416399 GAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGATGAAGTTTG 32416340 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| |||||||| || || ||||| | || ||| || || |||||||| ||||| Sbjct 32416339 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTC 32416280 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || |||| || || || || || || ||||| || | || ||||| Sbjct 32416279 CTTATCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTAGGGT 32416220 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || |||||||| | ||||| Sbjct 32416219 GATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 >seq21 Length=30942271 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 9/199 (5%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| | |||||||||||| || || || |||| | |||||| |||||||| ||| Sbjct 13470269 AGGTGCAAAGTGGACTCTTTCTGGATGTTTAAATCAGAAAGAGTGTGGCCATCTTCCAGC 13470328 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 || || | ||| | ||| || || ||||| | |||||||| || || || ||| Sbjct 13470329 TGTTTGCTTGCAAGGATTAGCTTCTGCTGGTCAG-----ATGCCTTCCTTATCCTGGATT 13470383 Query 195055 TTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 || |||||| || |||||||||| | | || |||| || ||| | | |||| Sbjct 13470384 TTAGCCTTGACATTTTCAATGGTGTTGCAGGAC--TCCAGCTCTAGGATGATGCTCTTGT 13470441 Query 195113 CTGTCAAAGTTTTTACGAA 195131 | ||||| ||||| || || Sbjct 13470442 CAGTCAAGGTTTTCACAAA 13470460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109333463056907