Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq42 116 2e-21 seq67 113 3e-20 seq65 105 4e-18 seq17 93.3 3e-14 seq24 89.7 3e-13 seq76 87.8 1e-12 seq49 84.2 1e-11 >seq42 Length=18384968 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || || | || |||| ||| Sbjct 13800107 ACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCC 13800048 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || | |||||| || || || |||||||| | || | ||||||||||| Sbjct 13800047 AGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 13799988 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | | || | || | || ||| || |||| ||| ||||| || Sbjct 13799987 ATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTG 13799928 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||| || ||||||||||| Sbjct 13799927 CCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq67 Length=9509266 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||| |||| ||| | |||| || ||||||||||| || || || | ||||| || Sbjct 6398370 CTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGGCCA 6398311 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||||||| || || ||||| || |||| |||||| ||| | || | || ||||| Sbjct 6398310 TCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTA 6398251 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || || || || || | |||| | || || |||||| |||| ||| ||| Sbjct 6398250 TCCTGGATTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGTGATG 6398191 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| || ||||| |||||||||||||| Sbjct 6398190 GTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq65 Length=10584338 Score = 105 bits (116), Expect = 4e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| |||||||| | |||| ||| |||||||| || || ||||| Sbjct 10480970 TCCTTCTGAATGTTGTAGTCCGATAAAGTTCGGCCATATTCCAGCTGCTTGCCAGCAAAG 10480911 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTG-TTTGACGGA 34909 || |||| |||||| || | || | || ||||| || || ||| | ||| ||| Sbjct 10480910 ATCAGTCTTTGCTGATCCAGAGGAATTCCTTCCTTATC-CTGGACTTTGGCTTTTACGTT 10480852 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||||| || || |||||| |||| ||| ||||| || || || || ||||| || Sbjct 10480851 TTCTATCGTATCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCTGTAAGGGTCTTGAC 10480792 Query 34970 AAAGATCTGCATATT 34984 ||||| |||||| || Sbjct 10480791 AAAGACCTGCATCTT 10480777 >seq17 Length=35549867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||| ||| ||||| || | ||||| |||| |||||||| || || ||||| Sbjct 25101843 TCCTTCTGAAGGTTGTAGTCAGATAAACTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 25101902 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 | |||| |||||| || | || | || ||||| || || || ||| || | Sbjct 25101903 GTCAGTCTTTGCTGATCCGGAGGAATGCCTTCCTTTTCCTGGATTTTGGCTTTTACATGT 25101962 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||||| || || ||||| || | ||| ||||| || || || |||||||| || Sbjct 25101963 TCTATCGTATCTGAGGGCTCAATCTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTGACG 25102022 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 25102023 AAGATCTGCAT 25102033 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || || || ||||| ||||| || ||| | || |||| ||| Sbjct 30593100 ACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 30593041 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | | |||||| | || | || ||||| || Sbjct 30593040 AGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCCTGG 30592981 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || | | |||||| || | ||| ||||| | Sbjct 30592980 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGGTCT 30592923 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | | || || |||||||||||||||||||| Sbjct 30592922 TGCTGGTCAGGGTCTTCACAAAGATCTGCAT 30592892 >seq24 Length=26830293 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/224 (70%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 34760 CCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCT 34819 ||||| | || |||| ||| | ||| || ||||| ||||| ||||| || ||| | Sbjct 11934364 CCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 11934305 Query 34820 TCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCC 34879 | |||| |||||||| || || ||||| || || | ||||| || | || | || Sbjct 11934304 GTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCC 11934245 Query 34880 CTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCG 34937 ||||| || ||||| ||||| || || || | |||| || ||| || || Sbjct 11934244 TTCCTTATCCTGGATCTTGGCCTTGAC--ATTCTCGAT-GTTTCATTGGGCTCCACCTCC 11934188 Query 34938 ACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||| ||||| || || || || |||||||||||||||||||| Sbjct 11934187 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 11934144 >seq76 Length=7797616 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || ||| Sbjct 4980828 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCC 4980887 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | || ||||| || Sbjct 4980888 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGG 4980947 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || | || ||| || || | ||| ||||| | Sbjct 4980948 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCT 4981005 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| ||||||||||| Sbjct 4981006 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4981036 >seq49 Length=14824766 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | ||| | || |||||||| || || ||||| Sbjct 11086286 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAAG 11086227 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || || || ||||| ||||| | Sbjct 11086226 ATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTGACATTT 11086167 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || || | ||| ||||| || || || || |||||||| Sbjct 11086166 TCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 11086107 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 11086106 AAGATCTGCAT 11086096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324592369605288