Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 107 2e-18 seq40 87.8 2e-12 >seq9 Length=49469770 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | ||||||||||| ||||| || || Sbjct 15784990 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTC 15785049 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 15785050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 15785109 Query 19105 AC 19106 || Sbjct 15785110 AC 15785111 >seq40 Length=19049039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| | || || | |||||| || | Sbjct 15953273 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTGGGCTCAGCAATATGGATGT 15953214 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || ||||| || ||||||||| |||| | || Sbjct 15953213 TCAAAGACTGGCTTTGATCAATGAAGGCACCCCTCTCAGCTGCC--ATCTTGAGTACGGT 15953156 Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || || | || ||||| || || ||||||| |||||| | ||| || || Sbjct 15953155 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAGGTCATCAGG 15953105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562035578302440