Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq129 131 1e-24 seq67 105 5e-17 seq3 102 7e-16 seq17 89.7 4e-12 seq65 86.0 5e-11 >seq129 Length=2073869 Score = 131 bits (144), Expect = 1e-24 Identities = 360/546 (66%), Gaps = 17/546 (3%) Strand=Plus/Plus Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || || || || || || ||||| || || || ||| | || || || || || | Sbjct 758695 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCCAGCTACGTGGCC 758754 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAAT 550162 |||||||| || || | | | | || || || || || | || | ||| || ||| Sbjct 758755 TTCACGGACACGGAGCGTCTGATCGGCGACGCGGCCAAGAACCAGGTGGCCA-TG--AAT 758811 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || || ||| | |||||||| |||||| |||| || |||| ||||||||| | | Sbjct 758812 CCCCAGAACACTGTCTTTGATGCCAAACGTCTAATCGGCAGAAAGTTTAATGATCCTGTT 758871 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTAT 550282 || || |||| ||||| | ||||||||||||| | | |||| || || || | Sbjct 758872 GTGCAATCAGACATGAAACTTTGGCCTTTCCAAGTGATCAATGAAGGGGGCAAGCCCAAG 758931 Query 550283 ATTGAAGCTACTCATGAAGG--ATCTGTTAAACAATTTTCA--CCAGAACAAATTTCATC 550338 | | | || || |||| | | ||| | |||| || || | || || || Sbjct 758932 GTGCTGGTTTCTTATAAAGGGGAGC----AAAAAGCTTTCTACCCGGAGGAGATCTCGTC 758987 Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA 550398 ||||| | | || ||||| | || || |||||| | || | ||| || | Sbjct 758988 CATGGTGCTCACCAAGATGAAGGAGACCGCTGAGGCTTTTTTGGGCTACCCAGTGACCAA 759047 Query 550399 TGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGC 550458 || || || || || ||||| ||||| || ||||| || || || || || || ||||| Sbjct 759048 CGCTGTGATCACAGTGCCAGCCTATTTCAACGACTCGCAGCGCCAGGCCACAAAGGATGC 759107 Query 550459 TGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || ||||| ||||| ||||| ||| | || ||||||||||| || |||||||| | Sbjct 759108 AGGTGTGATTGCAGGACTCAATGTGCTTAGAATCATCAATGAACCCACAGCTGCTGCCAT 759167 Query 550519 TGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---G 550575 ||| ||||| | |||||| | | | ||| | |||| || |||||||||| | Sbjct 759168 TGCGTATGGTTTAGATAAAGCTGGTCAGGGAGAGCGACATGTCCTGATCTTTGATTTGGG 759227 Query 550576 TGGAGG 550581 |||||| Sbjct 759228 TGGAGG 759233 >seq67 Length=9509266 Score = 105 bits (116), Expect = 5e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| |||||||||| || | ||| |||||| || || || || ||||| || ||||| Sbjct 6398338 AATGTTGTAATCAGATAAACTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCT 6398279 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||||||||| |||||||||||||| ||||| || ||||| || ||| || ||||| Sbjct 6398278 TTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTATACATTTTCTATTGT 6398219 Query 563412 ATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 ||| | | | | ||||| || | || || || ||||| || || || || || || Sbjct 6398218 ATCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTG 6398159 Query 563472 CAT 563474 ||| Sbjct 6398158 CAT 6398156 >seq3 Length=63406555 Score = 102 bits (112), Expect = 7e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 550421 TATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAAT 550480 || || |||||||| || ||||| || || ||||| |||||| |||||||| || ||| Sbjct 58826483 TACTTCAATGACTCTCAGCGTCAGGCCACCAAAGACGCTGGAACCATTGCTGGTCTAAAT 58826542 Query 550481 GTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||| | || |||||||| || ||||||||||| |||| ||||| || || || Sbjct 58826543 GTTCTTTGGATCATCAATGAGCCAACTGCTGCTGCTATTGCTTATGGCCTGGACAA 58826598 >seq17 Length=35549867 Score = 89.7 bits (98), Expect = 4e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 563296 TTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGC 563355 ||||| |||| || | ||| |||||| || || || || ||||| | ||||||||| Sbjct 25101855 TTGTAGTCAGATAAACTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGC 25101914 Query 563356 TGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCA 563415 ||||| |||||||| ||||| || || || ||||| |||||| || || ||||| Sbjct 25101915 TGATCCGGAGGAATGCCTTCCTTTTCCTGGATTTTGGCTTTTACATGTTCTATCGTATCT 25101974 Query 563416 GTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | | | || || || | || || || |||||||| || ||||| || ||||| Sbjct 25101975 GAGGGCTCAATCTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 25102033 >seq65 Length=10584338 Score = 86.0 bits (94), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || || ||||| || ||| || || ||| ||||| || | || ||||| || | Sbjct 10480991 AGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAAAGTTCGGCCATAT 10480932 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || || || || || ||||| || |||||||||||||| ||||||||||||| ||||| Sbjct 10480931 TCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGAATTCCTTCCTTATCC 10480872 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442 || | ||| |||||| || || ||||| | | | | ||||| || | || Sbjct 10480871 TGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACCTCGAGGGTGATGGTC 10480812 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || || || || | ||||| Sbjct 10480811 TTGCCTGTAAGGGTCTTGACAAAGACCTGCAT 10480780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028744890521290