Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq37 179 5e-40 seq129 82.4 1e-10 >seq37 Length=20254952 Score = 179 bits (198), Expect = 5e-40 Identities = 197/262 (75%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 2203 GGAAACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCG 2262 || ||||||||||| | || || | |||||||| ||| |||||| ||||| ||| ||| | Sbjct 10584922 GGCAACTGAAGAACTTGCAAGTTACCAATCACATTCAGCTGTCTGAGAATAGGACCTGTG 10584863 Query 2263 AGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGG 2322 ||||||| |||||||| ||||| ||| |||| |||| || |||| |||| ||| || Sbjct 10584862 AGATCCACCTGACCTGCTCTGTGGAGAATCCAGATGATAATGTCTCATTCAGGTGGCAGA 10584803 Query 2323 CCTTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACA 2382 | || || | | |||| | || || |||||||| | |||||||||||||||||| Sbjct 10584802 CACCAGGAAACATGTATCTAAGTGAACCAAACCTCACTATCTCCTGGGACCCCAGGAATG 10584743 Query 2383 GCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGG 2442 |||||| |||| ||||| ||||| || |||||| ||| | ||| | ||| |||| | Sbjct 10584742 CCAGTGAACAGAGTTACACCTGCATAGCTGAAAACCCTGCCAACAACTTATCTCTCACTG 10584683 Query 2443 TCTCGGCCCAGAAGCTGTGTGA 2464 | | |||||| | || ||||| Sbjct 10584682 TGTTTGCCCAGGAACTCTGTGA 10584661 >seq129 Length=2073869 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || |||||||| || | ||||||||||| ||| ||||||||||| || | | |||| Sbjct 1909108 CCCTCATGTTGTACATGGCATGTGTATCTGTGCTCCTCTCCAGAAGGCACCAGCACAGCT 1909167 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||| || || || | || || | | |||| | || || Sbjct 1909168 GCCCACTTCTGGAAGGTTCCATACCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGG 1909227 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | |||| || || ||||||| ||| || | | | || || || || || |||| Sbjct 1909228 GTCAGATCCTCCCCATCTCGATGCCAGGTGAGTGTGATGTCCTTGGGGTAGAAGCCCAGG 1909287 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 1909288 GCCCAGCACC 1909297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629201227997160