Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq24 105 5e-18 >seq6 Length=51880498 Score = 123 bits (136), Expect = 2e-23 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || ||||| || || |||||||| ||||| || | ||||||||| ||||| ||||| Sbjct 43802740 AGTCCAGTGACATGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 43802681 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGCT 29987 || || || |||||||| |||||||||||||| | ||| || || ||||| ||| || || Sbjct 43802680 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAACTGGCAGGACAGCTCGCCGTTCACT 43802621 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||||| ||||| || | | ||||| || || || ||||| Sbjct 43802620 -ACGTAGAACTGGCAGAGAGCATGGCATGGGGGCAGGGCCAT 43802580 Score = 109 bits (120), Expect = 4e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| ||||| || ||||||||||||||||| || || || || |||||||| ||||| | Sbjct 43799761 TGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCCTCCT 43799702 Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | ||| ||| || |||||| ||| |||| |||| |||| || |||||||| | Sbjct 43799701 CTCTGGTTGAGAATCCAAGGCTGTCCAGAAATTCTCGGGAAGCGTTCGCATCCCAGATTT 43799642 Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | || ||||| | || || ||||| | |||||||| || Sbjct 43799641 TCACTCCCTTGGCAGACAGTTCTTTAGCATTTGTGGATCC 43799602 >seq24 Length=26830293 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || |||||||| || | ||| || ||||| ||||||| | |||||| |||||| Sbjct 24359535 TTGAGTTCTCTGCTGAGCACAATGTTGATTCTGTCCTTCAGAGGCCGATTCTTCTCGGGG 24359476 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| | |||||| ||||||| |||||| || ||| Sbjct 24359475 ATGGAGAACCAGGTCTTCCGACCCATGATCACCAGGTTCTGTTTACCT 24359428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408565703138633