Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq49 93.3 3e-14 seq17 93.3 3e-14 seq42 84.2 2e-11 >seq49 Length=14824766 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | || | | || |||| ||| Sbjct 11086298 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGC 11086239 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| |||| | ||| || ||||| || |||||||||||||| || || || Sbjct 11086238 TTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 11086179 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | ||||| | |||||| || || |||| || ||||| || Sbjct 11086178 GCCTTGACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTC 11086119 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 11086118 AGGGTCTTCACGAAGATCTGCATG 11086095 >seq17 Length=35549867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || || || | ||||| || | | | ||| | |||| |||| || Sbjct 25101830 ATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCGGCCATCTTCCAGCTG 25101889 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| ||| | || ||||| || ||||||||||| || || || ||||| Sbjct 25101890 CTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTCCTTTTCCTGGATTTT 25101949 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||||| ||||| || || || | || | ||||| |||| || ||||| || Sbjct 25101950 GGCTTTTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGTGATGGTCTTGCCTGT 25102009 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || |||||||| Sbjct 25102010 AAGAGTCTTGACGAAGATCTGCAT 25102033 >seq42 Length=18384968 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || ||||| |||| | ||| | |||| |||| ||| Sbjct 13800101 TGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCCAGCTGC 13800042 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || | ||||| || | |||||| || || || || ||||| || || || || || || Sbjct 13800041 TTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 13799982 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || |||| | ||||| | ||||| || || |||| || ||||| || Sbjct 13799981 GTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTC 13799922 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || ||||| || ||||||||||| Sbjct 13799921 AGGGTCTTTACGAAGATCTGCATGGT 13799896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396228070290297