Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq67 107 1e-18 seq42 104 2e-17 seq6 84.2 2e-11 >seq67 Length=9509266 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || ||||| || || |||| ||| || ||||| ||||||||||||| |||||| | || Sbjct 6398368 CAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGGCCATC 6398309 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 6398308 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATC 6398249 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || || || |||| | | | || || | ||| ||||| | || || || Sbjct 6398248 CTGGATTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGTGATGGT 6398189 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | || || ||||| |||||||||||| Sbjct 6398188 CTTGCCCGTAAGGGTCTTGACAAAGATCTGCATCGTG 6398152 >seq42 Length=18384968 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||| || || | ||||| || |||||| |||||| || || ||||| || || Sbjct 13800126 GCCACCCCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGA 13800067 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| | || |||| |||||| | |||||| || || ||||| || |||| ||| Sbjct 13800066 CAGAGTGCGACCATCCTCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGG 13800007 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || | | | || | |||||| Sbjct 13800006 GATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCAC 13799947 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||| | || || || || ||||||| || ||||| || |||||||| ||| Sbjct 13799946 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATGGTG 13799895 >seq6 Length=51880498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || ||||| || || ||| ||| || ||||| ||||| |||||| | || | | || Sbjct 32416393 CAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGATGAAGTTTGGCCATC 32416334 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||||| |||| || || ||||||| |||| || ||||| || Sbjct 32416333 TTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATC 32416274 Query 48674 GCTAATCTTTTG-TTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732 || ||| | ||||||| | | | || || | ||| |||| | || || | Sbjct 32416273 -CTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTAGGGTGATGG 32416215 Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 | || ||||| | || ||||| || |||||||||||| Sbjct 32416214 TCTTGCCCGTAAGGGTCTTTACGAAGATCTGCATCGTG 32416177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380889218662983