Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq78 181 2e-40 seq14 93.3 8e-14 seq7525 91.5 3e-13 seq40 91.5 3e-13 >seq78 Length=8204013 Score = 181 bits (200), Expect = 2e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||| ||||||||||||||||| Sbjct 3619412 AGCAGCTGGCAGCCATTGCTGACGTGGGTCATGACCTTCTGCTTGAGTTGGGCCACCTGC 3619471 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | ||||| |||||||| || ||||| |||| ||| || |||||| Sbjct 3619472 TCCCGGAGGAGGCCGGCGGTGTTGGACAGCCCCGCGTTCTCAGCCTTCAGGGTCTTCACC 3619531 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| |||||||| || ||||| || | | ||||| |||||||| |||| Sbjct 3619532 TTGTCCTCCAGGCGCGCGATCCGCTCCAGCTTCCTCTTCCGGCACTTGGTGGCCGCCAGT 3619591 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| || || Sbjct 3619592 CGGTTCCGCAGCCGCTTCCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTAATGGGC 3619651 Query 241625 GAC 241627 ||| Sbjct 3619652 GAC 3619654 Score = 143 bits (158), Expect = 5e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| |||||||| | | ||| || | ||| Sbjct 1691255 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCCCGCAGCAGGCTCGCCGTGGACGCCAGC 1691196 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||||||||||||||| || | |||||| ||||| Sbjct 1691195 TCGGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCCTCCAGGCGGGAGATGCGCTCCAGC 1691136 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 ||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 1691135 TTGCGTTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 1691076 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||||||||| ||||||||||| || || Sbjct 1691075 ATGCGTTCCTGCGTGTCCATGTCGATGGGCGA 1691044 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| ||||||||||||||| | ||||| || | | ||||| |||||||| ||||||| Sbjct 3619449 TCTGCTTGAGTTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTGTTGGACAGCCCCGCGT 3619508 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | |||| ||| || | || |||||||| |||||||| || |||||||| Sbjct 3619509 TCTCAGCCTTCAGGGTCTTCACCTTGTCCTCCAGGCGCGCGATCCGCTCCAGCTT 3619563 >seq14 Length=40210847 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || |||| ||| ||||| | |||||||| ||| |||||||| | || | || ||| Sbjct 6356605 TCATCCCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCAGGCATCAGGCCTCGCTTCTTG 6356546 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || | |||||| ||||| |||||||| ||||| ||||| || ||||| || Sbjct 6356545 AGCCAGAAGATGGACGCGAAGGAGCCGGAGAAGAAAATGCCTTCCACCGCAGCGAAGGC 6356487 >seq7525 Length=1833 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||| ||| || || || ||||| || | ||||| |||| ||| Sbjct 1309 TTCACTTTTTCCTCCAACCGGGCAATTCGCTCCAGCTTCCTTTTCCGGCACTTGGAGGCG 1250 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 1249 GCAATGCGGTTCCTCATACGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 1190 Query 241619 ATCGGAGACTTGGGT 241633 || || ||| |||| Sbjct 1189 ATGGGGGACAGGGGT 1175 >seq40 Length=19049039 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || || || | ||| || ||||||||||||||||| |||||| || |||||||| ||| Sbjct 15941911 GTATATTCTACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCAAGGTTCTGCTGG 15941852 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 || ||| ||| |||||| ||||||||||||||||||| || ||||| Sbjct 15941851 TTGCTCTTGCGGTTACAAGAATCTTTGTAGAGCATGTAGGGGGTGCCTGTCTC 15941799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931411456208640