Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq14 100 5e-16 seq40 93.3 8e-14 seq9 84.2 4e-11 >seq14 Length=40210847 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || || ||| | |||||||| ||||| ||||| ||||| || ||| ||| || || ||| Sbjct 6356472 GGAGAACGGGTTGTAGCCTTCGCTGCGGTGGAAGGCATTTTCTTCTCCGGCTCCTTCGCG 6356531 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 ||||||||||||||||| || || ||||| ||||| ||||| ||||| || || Sbjct 6356532 TCCATCTTCTGGCTCAAGAAGCGAGGCCTGATGCCTGGGCT-CACTTTCTCCAATGAACT 6356590 Query 25992 CATCAGCAGGGACGAGG 26008 ||| |||||||| |||| Sbjct 6356591 CATTAGCAGGGATGAGG 6356607 >seq40 Length=19049039 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || ||| ||||||| | || ||| ||||| || |||||||||||||||||||| Sbjct 15941926 ACCTCATCTTTGCTGGTATATTCTACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTT 15941867 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 || |||| | || || |||||| || || || ||||||||||| |||| | Sbjct 15941866 CCAAGGTTCTGCTGGTTGCTCTTGCGGTTACAAGAATCTTTGTAGAGCATGTAGGGGGTG 15941807 Query 221852 CCAGTCTCCAGCTGAG 221867 || |||||| ||||| Sbjct 15941806 CCTGTCTCCGTCTGAG 15941791 >seq9 Length=49469770 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||| || |||| |||||||||||||| || || || || ||| || || ||||| Sbjct 15785123 GGGGAGAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 15785064 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || || |||||||| ||| ||| || ||||| || || |||||||| || ||| Sbjct 15785063 GCTATATTCTGGCTGAAGAAGAGAGGTCTGATGCCTGGACTCACTTTTTCCAATGAACTC 15785004 Query 25993 ATCAGCAGGGACGA 26006 |||||||| || || Sbjct 15785003 ATCAGCAGAGATGA 15784990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928723806354240