Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 3e-11 >seq3 Length=63406555 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 153791 TTGTAACGTGGCAAAAGAAGAAAGCTGTAGGTCCAGAAAATATGGCCACGTATAGCAAAG 153850 |||| || ||||| || ||||| ||||| | ||||||||||||| || | ||||| Sbjct 25948774 TTGTGACATGGCAGAAAAAGAAGGCTGTGAGCCCAGAAAATATGGTGACCTTCAGCAAGA 25948715 Query 153851 CCCACGGTGTAGTGCTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGGTC 153910 |||||| || || | ||||| | |||| || | | || || || | | || | Sbjct 25948714 ACCACGGGGTTGTCGTCCAGCCTGCCTATAGGGACAAGTTAAACATCACGCAGCTGGGGC 25948655 Query 153911 TTTTAAACAGTAGTATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATATGT 153970 | ||| | || || || ||||| | || ||||| ||||| || || || |||| Sbjct 25948654 TGCAGAACTCCACCATCACCTTCTGGAACACGACCCTGGAGGATGAGGGGTGCTACATGT 25948595 Query 153971 GTCTGTTTAATATGTTCGGTTCTGGTAAGGTATCGGGAACG 154011 |||| ||||||| || || || || ||| | || |||||| Sbjct 25948594 GTCTTTTTAATACTTTTGGGTCGGGGAAGATCTCAGGAACG 25948554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649214620662960