Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq21 98.7 6e-15 seq67 93.3 3e-13 seq129 91.5 1e-12 >seq21 Length=30942271 Score = 98.7 bits (108), Expect = 6e-15 Identities = 306/462 (66%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 ||||||||||| | ||||| ||||| ||||| ||||| || | | || | ||| | Sbjct 873374 ACAGCTGGAGACACCCATCTGGGTGGAGAAGACTTTGACAACCGCATGGTCAACCAT--T 873431 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAGCATT 475482 ||| ||| |||||| | || |||| || ||| | | | | | |||| | Sbjct 873432 TCATTGCAGAGTTCAAGCGCAAGCATAAGAAGGACATCAGTGAGAACAAG--AGAGCAGT 873489 Query 475483 AAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAAC 475542 || || || | ||||||||||| || |||||||| | || ||||| || || | Sbjct 873490 CAGGCGCCTGCGCACTGCTTGTGAGCGGGCTAAGCGCACCCTGTCTTCCAGCACCCAGGC 873549 Query 475543 TACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGG 475601 | |||| | |||||||| | ||||||||| || || || ||| ||||| ||| Sbjct 873550 GAGCATTGAGATAGATTCTCTGTATGAAGGAATCGACTTCTACACCTC-CATTACCCGGG 873608 Query 475602 CTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAG 475661 || ||||||||| | | |||| || || | || | || || || || | | Sbjct 873609 CTCGATTTGAAGAGTTGAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTCGAGAAGG 873668 Query 475662 TTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTT 475721 || ||||| | || | ||||| || || ||||||| || || || || || |||| Sbjct 873669 CCCTTCGAGATGCCAAGTTAGACAAGTCGCAGATCCATGACATAGTCCTGGTGGGCGGTT 873728 Query 475722 CAACAAGAATTCCAAAAAT-AAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTT 475779 | || |||||||| || || ||| || ||| | || || | || ||||| ||| || | Sbjct 873729 CTACCAGAATTCCCAAGATCCAGA-AACTGC-TCCAGGATTTCTTCAATGGGAAAGAGCT 873786 Query 475780 AAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || | || || ||||| ||||| || ||||| || Sbjct 873787 GAACAAGAGCATCAACCCCGATGAGGCTGTGGCCTATGGTGC 873828 >seq67 Length=9509266 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| || | ||| | |||||| || ||||| |||||||| || || | ||| Sbjct 6398334 TTGTAATCAGATAAACTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGC 6398275 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| ||||||||||||||||| || || || || || ||| ||| || ||||| Sbjct 6398274 TGATCTGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTATACATTTTCTATTGTATCC 6398215 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || || || || || ||||| || || || || Sbjct 6398214 GAGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTG 6398159 >seq129 Length=2073869 Score = 91.5 bits (100), Expect = 1e-12 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || |||||||| |||||||||||||||||||| || || || || || || ||||| Sbjct 760012 GGAATCCCTCCTGCACCCAGAGGAGTTCCTCAAATCGAGGTGACCTTCGACATCGATGCC 760071 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 || |||||||| ||||||||||| Sbjct 760072 AACGGTATTCTCAATGTTACTGC 760094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267732192747308