Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq50 405 6e-108 seq139 277 2e-69 seq3 116 4e-21 seq8 86.0 7e-12 >seq50 Length=14117412 Score = 405 bits (448), Expect = 6e-108 Identities = 686/988 (69%), Gaps = 7/988 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || ||||| || || ||||| || |||| ||| || | |||||| || ||| || || Sbjct 4069123 TGCCGCAGGTGCTCATCCAGGCACTGGATGGCAAAGAGGTCAACATCCGTGTCAAACTTG 4069064 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| ||| | || ||||| | || ||| || | |||||||||| Sbjct 4069063 TTGGCAAACAAGTGGTGT---TTCCGCAGCATCCAATTCAAGTCGCCAGCCCCGAACACG 4069007 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | ||| || |||| ||| || ||||| | || || || | ||||||| Sbjct 4069006 CACACAGAGCGCACGTGGACACCGTGGCAGGGTGGGTAGGGCGCGCCCTTGGACACGTCA 4068947 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| |||||||| || | |||||||||||| || |||||| Sbjct 4068946 CCTTCAAAGTACTGCCACTTGACAAACCTCGCGACCGCCTGCATGTCAGACAAGTCGTAC 4068887 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | | | || | || || || | || || | || | ||||||||| || Sbjct 4068886 TTCTGACTTAACGATACAGAGCCTGGCACTTCTGGGATCCTTTGGATGGTGGCCCAGAGA 4068827 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAACCTGTC 160405 | ||||| |||||||| ||||||| | ||| ||||| |||| || | | | || Sbjct 4068826 TACTCGTCCGGGCTGTAGGTGTCCTGCGCCCACTCCATAAACTTCTGCATGTTTTCATTC 4068767 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | ||| |||| | || || || | || |||||||| || ||||| ||||| | Sbjct 4068766 TC-CAGCACGTAACCCACATACTCCCTCCTGACCACAAAGTAGGCACTGCCCGAGAAGAG 4068708 Query 160466 CGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTT-AGACACCACTCCTTTCA 160524 || ||||| | || ||| || ||| || || ||||| | | || | || |||| Sbjct 4068707 AGGGATGGGGAGGGGAGGCTGCTCCTTGACCGTGCCCGTGTTTATAAGCCTC-CCGTTCA 4068649 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | ||||| |||| ||||||| | ||| | || ||||| | ||||| || | Sbjct 4068648 CAATGGCGTGATGCTTTCTCCACCTTTCTTCCTTATTGGGCGGCATCCTCTCCGTTTCCA 4068589 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 | |||| | || | ||| || |||| |||| ||||| ||||| || |||| | Sbjct 4068588 GGTTGTTCTCGCCCATTAACGACTTGAGCTTTCTGACTATCTCCAGGTTGGTTTTGATAG 4068529 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 | || || | ||||| | ||| |||| ||||||||| | ||| |||||| | | |||| Sbjct 4068528 GGAAATCCATCCCGCAAAGGTTGATCAAGTACTTCCAGTCCGCACTCAGGCCATAGAGGT 4068469 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 || ||||||| || | |||||||| ||||| ||||| || || ||||| ||| |||| | Sbjct 4068468 CCTTCATGCAGTTGAGGTCTGCCTGGACGCGACTCCATGAGGCATACACCACGGTCTCCA 4068409 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGA 160824 | | ||||||||| |||||||| |||||| ||| ||| ||| ||||| |||| Sbjct 4068408 GCTGACTGGCCACGAAGACGTTCGTGAAACAGGACGCGAGGCCCCTGACCGCAGCCAAGA 4068349 Query 160825 ACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 | | || | ||| | ||| ||||| | ||| || | |||||||||| |||||||| Sbjct 4068348 AGGATTCCTCTGACTTCCTGTCGACGTGAATGCAGTAGAAGTTCTGAGGCATGTAGATGG 4068289 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 |||| || | ||| || | ||| || || || ||||| | |||| || || || || | Sbjct 4068288 CCCTCAGGAGCCTGTCCAGCATTTCGATTTTGTGATGAACGACGACGGAATAAGCGATGG 4068229 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 ||||||| | |||||| || || | | || | ||| || || ||||||| ||| Sbjct 4068228 GAAACTCTGCCTCCTCTTTGCTAAGCGGCTGCGTGATGTATTTGCGTCTCTTGATGAAAG 4068169 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 | || |||| ||||||||||| || Sbjct 4068168 ACGTGCAGTCCCTGGTCATGTTGATGTA 4068141 >seq139 Length=1774119 Score = 277 bits (306), Expect = 2e-69 Identities = 661/987 (67%), Gaps = 27/987 (3%) Strand=Plus/Minus Query 160051 GCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTG 160110 |||| || || ||||| || |||| ||| |||| |||||| ||| ||| || | || | Sbjct 481237 GCAGGTGCTCATCCAGGCACTGGATGGCAAACAGGTCAACATCTGTGTCAAACTCGTTGG 481178 Query 160111 CGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGA 160170 | |||| ||||| ||| | || ||||| | || ||| || | |||||||| || | Sbjct 481177 CAAACAAGTGGTGT---TTCCGCAGCATCCAATTCAAGTCGCCAGCTCCGAACACCCACA 481121 Query 160171 CGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTT 160230 | || || | ||| || | || |||||| ||| | | || || || | ||||||||||| Sbjct 481120 CAGAGCGCACGTGGACACTGTGGCAAGGTGGGCAGGGTGCGCCCTTGGACACGTCACCTT 481061 Query 160231 CGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG--TATTT 160288 | | ||||||||||| |||||||| | | | | | |||| | || | || | Sbjct 481060 CAAAATACTGCCACTTGACAAACCTTGAGACAGAC---AAGTCGTACTTGCGGCTTAATG 481004 Query 160289 GTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTG 160348 |||| | | |||||| |||| | || | || | ||||||||| || | Sbjct 481003 ATACA----GAGCCCGGCACT---AACG----GGATCCTTTGGATGGTGGCCCAGAGATA 480955 Query 160349 TTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT-GTCCC 160407 ||||| |||| ||| ||||||| | ||| ||| | |||| || | | | |||| Sbjct 480954 CTCGTCCGGGCGGTAGGTGTCCTGCGCCCACTCCCTAAACT-TCTGGCTGTTTTCGTCCT 480896 Query 160408 GCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCG 160467 ||| |||| | | || || | || |||||||| || ||||| ||||| | | Sbjct 480895 CCAGCACGTAACCCAAATACTCCCTCCTGACCACAAAGTAGGCACTGCCTGAGAAGAGAG 480836 Query 160468 GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTT-AGACACCACTCCTTTCACC 160526 | ||||| | || ||| | || || | ||||| | | || | || ||||| Sbjct 480835 GGATGGGGAGCGGAGGCCGCACCTTCACCGTCTCCGTGTTTATAAGCCTC-CCATTCACA 480777 Query 160527 AGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGA 160586 | ||| |||| |||||||| | || | |||||| | ||||| || || Sbjct 480776 ATGGCGAT--GCTTTTTCCACCTTTCTTCCTCACTGGATGGCATCCTCTCCGTTTCCAGG 480719 Query 160587 CTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGA 160646 |||| | || | ||| || |||| |||| ||||| ||||| | |||| || Sbjct 480718 TTGTTCTCGCCCATTAACGACTTGAGCTTTCTGACTATCTCCAGGTTGATTTTGATGGGG 480659 Query 160647 AAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCC 160706 || || | ||||| | ||| |||| |||||| || | ||| |||||| | | |||||| Sbjct 480658 AAATCCATCCCGCAAAGGTTGATCAAGTACTTGCAGTCCGCACTCAGGCCATAGAGGTCC 480599 Query 160707 CTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGT 160766 |||||||| | | || ||||| ||||| ||||| || || ||||| ||| |||| || Sbjct 480598 CTCATGCAGTGGAGGTCGGCCTGGACGCGACTCCACGAGGCATACACCACGGTCTCCAGC 480539 Query 160767 TTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAAC 160826 | ||||||||| |||||||| |||||| | | ||| ||| |||| ||| ||| Sbjct 480538 TGACTGGCCACGAAGACGTTCGTGAAACAGGGCGCGAGGCCCCTGACCG-CAGCTGGAAG 480480 Query 160827 ATCT-TATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885 | | |||| ||| | ||| || | |||||| |||||||||||| |||| |||| Sbjct 480479 AGATGCCTCCGACTTCCTGTCTACACCAATGCAATAGAGGTTCTGAGGCATGTAGCTGGC 480420 Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGG 160945 ||| | | | | || | |||||| || || ||||| | ||||||||| || || || || Sbjct 480419 CCTCGGGAGCTTGTCCAGCATCTCGATTTTGTGATGAACCACGATAGAATAAGCAATGGG 480360 Query 160946 AAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATA 161005 |||||| | | | || ||| || | || | ||| || || ||||||| ||| | Sbjct 480359 AAACTCTGCCCCTTCTTTACTGAGCAGCTGCGTGATGTATTTGCGTCTCTTGATGAAAGA 480300 Query 161006 ATCACAATCCCGCGTCATGTTGATATA 161032 | || || | |||||||||||||| Sbjct 480299 CACGCAGTCACTGGTCATGTTGATATA 480273 >seq3 Length=63406555 Score = 116 bits (128), Expect = 4e-21 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||||| |||| | || |||| | || || |||| ||| |||||||| || Sbjct 25946174 GTTTGCCGGTAGTCCTTCACTTTTCCAAGGTGCAGCACCTGGCAGATCACCTCC---TTC 25946230 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| || || | | || || ||| || || |||||| Sbjct 25946231 CCCACCTGAGTCTTGGGGTCTTTGACATGGAGGACACTGGTGACAGACGTGGTCCCATTG 25946290 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 ||||| | | | | || ||||||||||||||||| || || ||||||||| | || Sbjct 25946291 GGATGTGATAGACTCTCAGTACTGTTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATC 25946350 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 ||||| || || || || || |||||||| || ||||||| Sbjct 25946351 ACAGGGGCTGGGCGAGCAGTGGCAGAGCAAGTGATATTTA 25946390 >seq8 Length=54109746 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 176234 ATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGG 176293 ||| ||| |||| |||| || || | |||||| | ||||| || |||| | || ||| Sbjct 19822582 ATACTTTGCTAGCTCACTGGGAGAATTATAATCTTCTACATGAATGAATGAATCTGCTGG 19822641 Query 176294 AATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAA 176353 ||| || || ||||| |||| || || || || | ||| | || || | | || | Sbjct 19822642 AATATAATTCTCATAGTTTTCCCTAGAAGGCCCCAGAACAACAGGCACAGAGCCAGCCAG 19822701 Query 176354 TAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAA 176413 || | ||||| |||||||| |||||| || | || || ||||||||||| | | Sbjct 19822702 AAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTATGGATGGAGTTTTCAAAGGAAAG 19822761 Query 176414 ATAGAACTTACA 176425 |||||| ||||| Sbjct 19822762 ATAGAATTTACA 19822773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577144009983960