Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq84 87.8 2e-12 >seq84 Length=5970396 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 |||| || || || || || ||||| || |||||||| |||| || | |||||||||| Sbjct 1556601 CACCGTAGGGCGACCGCGGGTAGAACGGGGTGGTCTCCTTCTGCGGTATTTCTTGCACCT 1556542 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 | || ||||||||||||||||| ||||| |||| Sbjct 1556541 TCCCGTAAAGTTCACTGGTGGAAGCTTGGTAGA 1556509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665407711035720