Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq40 91.5 2e-13 >seq40 Length=19049039 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | ||||| || | || ||||||||||| || || || || ||||| ||||| ||| Sbjct 15941772 TGGTACGCTATCATCGAGTCTCAGACGGAGACAGGCACCCCCTACATGCTCTACAAAGAT 15941831 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 |||||||| ||||| ||||| |||| | ||||| |||||| || || || ||| Sbjct 15941832 TCTTGTAACCGCAAGAGCAACCAGCAGAACCTTGGAACCATCAAGTGCAGCAACCTGTGC 15941891 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || ||||| |||| || || || |||||| Sbjct 15941892 ACAGAAATCGTAGAATATACCAGCAAAGATGAG 15941924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596491889352480