Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq67 107 4e-18 seq6 104 5e-17 seq65 89.7 1e-12 seq12 86.0 1e-11 >seq67 Length=9509266 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||||||| |||| |||| |||| || || ||||||||||| | ||| Sbjct 6398337 ATGTTGTAATCAGATAAACTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTT 6398278 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || |||||||| ||||| || ||||| || |||||| ||| | | Sbjct 6398277 TGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTATACATTTTCTATTGTA 6398218 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || || || || || ||||| || || || | || || | ||| |||||| Sbjct 6398217 TCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGC 6398158 Query 192535 AT 192536 || Sbjct 6398157 AT 6398156 >seq6 Length=51880498 Score = 104 bits (114), Expect = 5e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || |||||| | ||| | |||| |||| || || ||||||||||| ||||| Sbjct 32416362 ATGTTGTAGTCAGATGAAGTTTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTT 32416303 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || |||||||| ||||| || |||| ||||||||| ||| | | Sbjct 32416302 TGCTGATCCGGAGGAATTCCTTCCTTATCCTGGGTTTTGGCTTTTACATTTTCTATCGTA 32416243 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| | ||||| || ||||| || || || | || || | || |||||| Sbjct 32416242 TCCGAGGGCTCTTCCTCTAGGGTGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGC 32416183 Query 192535 AT 192536 || Sbjct 32416182 AT 32416181 >seq65 Length=10584338 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||||| ||| || || || || || ||||| ||||| ||| |||| || Sbjct 10480983 ATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAAAGTTCGGCCATATTCCAGCTG 10480924 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 || ||||||||||| | ||| || ||||| | || |||||||| ||||| || | ||| Sbjct 10480923 CTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGAATTCCTTCCTTATCCTGGACTTT 10480864 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 |||||| || ||| | ||| || | || || || || || ||||| || || || Sbjct 10480863 GGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCTGT 10480804 Query 192513 TAATGTTTTAATAAATATCTGCATTTT 192539 | || || | ||| | |||||| || Sbjct 10480803 AAGGGTCTTGACAAAGACCTGCATCTT 10480777 >seq12 Length=43805204 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || || | || |||||| | ||| ||| || || | ||||||||| | ||| || |||| Sbjct 34807108 AACACAAGATATAAAGTGGACTCCTTTTGA-ATGTGGTAATCAGATTAAGTTTGTCCATC 34807166 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 |||| ||| || || | |||||| ||| | ||||||||||| || |||||||| |||| Sbjct 34807167 TTCCAGTTGCTTGCCGGTAAAGATCAATATTTGTTGATCAGGAGGAATTCCTTCCTTATT 34807226 Query 192444 TTGTATTTT 192452 || ||||| Sbjct 34807227 CTGGATTTT 34807235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984348553153350