Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq72 104 7e-17 >seq72 Length=8522026 Score = 104 bits (114), Expect = 7e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || ||||| || || || || |||| || ||||| ||||||||||| | ||| Sbjct 6504841 GTCTTGACGGCTGTGTCGATGAGGCCCTCACGCCCTCCCATGGCATGGAAGAAGAACTCA 6504900 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 |||| || || | | ||||| |||| ||||| || || ||||||| | | Sbjct 6504901 GTCGGTGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGGCCCGTAG 6504960 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 || |||| | ||||| ||||| |||| || || | |||| | ||||| ||||| || Sbjct 6504961 TCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTAAAGCCAAACGGGATCCGCTTGCCC 6505020 Query 302800 TCAACGTTCTGCTGTCC 302816 |||||||||||||| || Sbjct 6505021 TCAACGTTCTGCTGCCC 6505037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471621084293877