Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq67 134 1e-26 seq6 125 6e-24 seq42 111 1e-19 seq49 107 2e-18 seq17 102 7e-17 seq76 100 3e-16 seq24 96.9 3e-15 seq30 91.5 1e-13 seq40 89.7 5e-13 seq26 84.2 2e-11 seq12 84.2 2e-11 >seq67 Length=9509266 Score = 134 bits (148), Expect = 1e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||||||| | || || || || || || || || || ||||| || || || Sbjct 6398153 ACGATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCC 6398212 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| |||||| ||| || || ||||| || || |||||||| ||||| ||| Sbjct 6398213 TCGGATACAATAGAAAATGTATAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCAGAT 6398272 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||| | |||||||||| || || |||||||| ||| ||| | || ||||| Sbjct 6398273 CAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGATTAC 6398332 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTG 24922 |||||||| ||||| | || || ||| ||||| || || || Sbjct 6398333 AACATTCAGAAGGAGTGCACTCTGCACCTGGTGCTGAGACTG 6398374 >seq6 Length=51880498 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||||||||| | || || || || || || || || || || || | ||| || Sbjct 32416178 ACGATGCAGATCTTCGTAAAGACCCTTACGGGCAAGACCATCACCCTAGAGGAAGAGCCC 32416237 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || |||||| |||||| || | ||| || || |||||||| ||||| ||| Sbjct 32416238 TCGGATACGATAGAAAATGTAAAAGCCAAAACCCAGGATAAGGAAGGAATTCCTCCGGAT 32416297 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTA 24879 || ||| | ||||||||||| || || |||||||| || | | |||| | || || || Sbjct 32416298 CAGCAAAGATTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGCCAAACTTCATCTGACTA 32416356 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| ||||| || || || ||| ||||| || || | || || || Sbjct 32416357 CAACATTCAGAAGGAGTCCACTCTGCACCTGGTGCTGAGACTCCGTGGTGG 32416407 Score = 100 bits (110), Expect = 3e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || || || || ||| ||| Sbjct 47505059 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCCAG 47505118 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||||| || || ||||| || ||||| || || Sbjct 47505119 CGACACCATCGAGAATGTCAAGGCCAAGATCC-AGGTAAGGAAGGCATCCCTCCTGACCA 47505177 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 47505178 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 47505237 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 47505238 CATCCAGAAGGAGTCCACCCTGCACCTGGT 47505267 >seq42 Length=18384968 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || ||||| || || || Sbjct 13799896 ACCATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCC 13799955 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | |||| || || |||||||| ||||| || || || || || || Sbjct 13799956 AGCGACACCATCGAAAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 13800015 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| | ||||||||| | || |||||||||||| | | |||| || || Sbjct 13800016 CAGCAGCGTCTCATCTTTGCCAGCAAGCAGCTGGAGGATGGTCGCACTCTGTCCGACTAC 13800075 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || || || || || || ||| ||||| | || |||| || ||| Sbjct 13800076 AACATCCAGAAAGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGGGGTGGC 13800126 >seq49 Length=14824766 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || ||| ||| | Sbjct 11086096 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGC 11086155 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || |||||||| || |||||||| || Sbjct 11086156 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 11086215 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | |||| || || ||| Sbjct 11086216 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 11086275 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 11086276 ATCCAGAAGGAGTCCACCCTGCAC 11086299 >seq17 Length=35549867 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||| | || || || || || || || || || | Sbjct 30592892 ATGCAGATCTTTGTGAAGACCCTGACCAGCAAGACCATCACCCTGGAGGTTGAGCACAGC 30592951 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || |||||||| || Sbjct 30592952 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAG 30593011 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 | | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 30593012 AAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 30593071 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || ||| |||| Sbjct 30593072 ATCCAAAAGGAGTCCACCCTGCACCTGGT 30593100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || | || || | Sbjct 25102034 GATGCAGATCTTCGTCAAGACTCTTACAGGCAAGACCATCACCCTTGAGATTGAGCCCTC 25101975 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || ||||| |||||| || ||||| || || ||||| || ||||| ||||| Sbjct 25101974 AGATACGATAGAACATGTAAAAGCCAAAATCCAGGAAAAGGAAGGCATTCCTCCGGATCA 25101915 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||| |||||| || || |||||||| ||| ||| | || || || || Sbjct 25101914 GCAAAGACTGACCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGACTACAA 25101855 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 | |||| ||||| || || || || ||||| || || Sbjct 25101854 CCTTCAGAAGGAGTCCACTCTGCATCTGGTGCTGAGA 25101818 >seq76 Length=7797616 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || || || || || || Sbjct 4981039 ACAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 4980980 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| || || ||||| || |||||||| Sbjct 4980979 AGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGAC 4980920 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| || | | | |||| || || Sbjct 4980919 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCTGACTAC 4980860 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || ||||| || || || ||| |||| |||| Sbjct 4980859 AACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 4980822 >seq24 Length=26830293 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 11934144 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAAT 11934203 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||||| || || ||||| || |||||||| || Sbjct 11934204 GAAACA-TCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGAACAG 11934262 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | |||| || || ||| Sbjct 11934263 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCACACCCTGTCTGACTACAAC 11934322 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| |||| |||| Sbjct 11934323 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 11934357 >seq30 Length=25365230 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| || || || || || || || || |||||||| || || || || Sbjct 16538576 ACAATGCAGATCTTCATGAAGACCCTGACAGGCAACACCATTACGCTTGAGGTGGAGCCC 16538517 Query 24761 ACCGACACAGTAGAAACGGTAAAACAA----AAGATCCAAGACAAAGAAGGAATACCTCC 24816 | |||||| | ||| || ||| |||||||| ||| |||| || || || || Sbjct 16538516 AGCGACACCTTCAAAAACGTTTTTCAAGGCGAAGATCCAGGACGAAGAGGGCATCCCCCC 16538457 Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || ||| |||||||||||| || ||| |||||||| Sbjct 16538456 GGACCAGCAGCGTCTGATCTTTGCCGACAAGCAGTTGGAGGAT 16538414 >seq40 Length=19049039 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||||||||| || | ||| |||| ||| || |||||| ||||| |||| |||| | Sbjct 15950533 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATC 15950474 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCAT 138611 || || || || ||||| |||||||| |||| ||||||||||| Sbjct 15950473 GACTCATTATTCCCCAGGATCTGAGCAGTGGAGGCGGTCGGCAT 15950430 >seq26 Length=25362064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || || || || || ||| ||| |||||| | || | || || | ||||||||| Sbjct 23897848 ATAACCCTGGAGGTGGAACCCAGCGACACCATCGAGAATGTCAAGGCCATGATCCAAGAT 23897907 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||||| | ||||| || || || | ||||||||||||| || |||||||| ||| Sbjct 23897908 AAGGAAGGCAGCCCTCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGAT 23897967 Query 24860 TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 | | |||| || || ||||| || ||| | || || || ||| |||| |||| Sbjct 23897968 GGCCACACCTTGTCTGACTACAACATCCAGAAGAAGTCCACCCTGCACCTGGTCCTGCGC 23898027 Query 24920 TTGCGCGGAGG 24930 ||| | ||||| Sbjct 23898028 TTGAGGGGAGG 23898038 >seq12 Length=43805204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || ||||| | || |||||||| ||||| ||||||||| ||||||||| |||| || Sbjct 34807235 AAAATCCAGAATAAGGAAGGAATTCCTCCTGATCAACAAATATTGATCTTTACCGGCAAG 34807176 Query 24848 CAGCTGGAGGATTCGAGAAACATG-TCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 || ||||| ||| || |||| | || ||||| ||||||||||||| || || || | Sbjct 34807175 CAACTGGAAGATG-GACAAACTTAATCTGATTACCACATTCAAAAGGAGTCCACTTTATA 34807117 Query 24907 CTTGGTGTTGCGA 24919 | |||||| || Sbjct 34807116 TCTTGTGTTGAGA 34807104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449838995213880