Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq19 100 2e-16 seq65 95.1 1e-14 seq67 84.2 2e-11 >seq19 Length=29527457 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || || || || || || ||||| || || || | |||||||| ||||| ||||| Sbjct 1159271 AGATCTGTTTCGGGATTCTCACACTCGGGGCAGAGAACAAACTTTTTAATGAATCCATCG 1159330 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | ||| || ||||| || |||||||| ||| | || || || ||| Sbjct 1159331 AGCATGTCCTGCAGCTTGTTGGCCTCGTGAGATCCGTTGACAATGTAGCGGTCATTCTTG 1159390 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | ||| || ||||| |||||||| || ||||||||||| || || Sbjct 1159391 ACGTCAAACTGGGTCTGCGCTCCCAGCTCACAGCCGAAGTACTTGGTGGG 1159440 >seq65 Length=10584338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| | |||||||| || | || ||||| ||||| ||| |||| ||||| Sbjct 10480777 AAGATGCAGGTCTTTGTCAAGACCCTTACAGGCAAGACCATCACCCTCGAGGTTGAGCCC 10480836 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| | | | |||||| || | || || ||||| | || ||||| Sbjct 10480837 TCGGATACGATAGAAAACGTAAAAGCCAAAGTCCAGGATAAGGAAGGAATTCCTCTGGAT 10480896 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||||| || | ||| || || |||||||| ||| | |||| | |||| ||| Sbjct 10480897 CAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAATATGGCCGAACTTTATCGGACTAC 10480956 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || ||||| |||| ||||| | ||||| || || || Sbjct 10480957 AACATTCAGAAGGAGTCTACTCTGCATCTGGTGCTGAGACTCCGTGGTGG 10481006 >seq67 Length=9509266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | || ||||| ||||| ||| |||| ||||| Sbjct 6398156 ATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCG 6398215 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | ||| || || || || || ||||| | || ||||| Sbjct 6398216 GATACAATAGAAAATGTATAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 6398275 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| || | ||| || || |||||||| |||| | ||| | | ||||||||| Sbjct 6398276 CAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGATTACAAC 6398335 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTG 110491 ||||| || || | || ||||| ||||| | |||||| Sbjct 6398336 ATTCAGAAGGAGTGCACTCTGCACCTGGTGCTGAGACTG 6398374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412789166665553