Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq57 87.8 2e-12 seq117 84.2 2e-11 >seq57 Length=12311806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43867 TCCGCTGGAAGGTGCCGTCGAGGGCGGCCACGATGACGATCTTCCCCGCGTTCGCCATGT 43926 ||| ||||||||||||||| ||||||||||| || || ||||||| | ||| |||||| Sbjct 2693767 TCCTCTGGAAGGTGCCGTCCAGGGCGGCCACAATCACAGTCTTCCCGGAGTTGGCCATGG 2693708 Query 43927 CCTCGCAGAACTCCACTAGGTCG 43949 ||| ||||||||||| | |||| Sbjct 2693707 TCTCACAGAACTCCACAATGTCG 2693685 >seq117 Length=2603576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 6533 CCACCCGCGGGTCGGTGGAGTTGCTGTCGAAGCGGACGATCTCCGTGTCGTCCACGTAGC 6592 ||| ||| |||| |||| ||||||||||||||| |||| || ||||||||||||||||| Sbjct 671045 CCATCCGAGGGTTCGTGGTGTTGCTGTCGAAGCGCACGAACTGCGTGTCGTCCACGTAGC 671104 Query 6593 CCACGA 6598 |||||| Sbjct 671105 CCACGA 671110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475979589631080