Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq65 107 2e-18 seq76 86.0 5e-12 seq40 86.0 5e-12 seq6 84.2 2e-11 >seq65 Length=10584338 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| | |||||||| || | |||||||| ||||| ||| |||| ||| | Sbjct 10480777 AAGATGCAGGTCTTTGTCAAGACCCTTACAGGCAAGACCATCACCCTCGAGGTTGAGCCC 10480836 Query 107613 GGCGATACTGTCGGCCAGGTAAAA-CAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 ||||| | | | |||||| | |||| | ||||| ||||| | || |||| Sbjct 10480837 TCGGATACGATAGAAAACGTAAAAGCCAAAG-TCCAGGATAAGGAAGGAATTCCTCTGGA 10480895 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||| ||||| || | ||| || || |||||||| | | | ||| | ||||||| Sbjct 10480896 TCAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAATATGGCCGAACTTTATCGGACTA 10480955 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||| ||||||||||| |||| ||||| ||||| | || || || Sbjct 10480956 CAACATTCAGAAGGAGTCTACTCTGCATCTGGTGCTGAGACTCCGTGGTGG 10481006 >seq76 Length=7797616 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| | || |||| | | Sbjct 4981037 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 4980978 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||| ||||| |||||| | || || || Sbjct 4980977 CGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCA 4980918 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || |||||||| |||| | || || | |||||||| Sbjct 4980917 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCTGACTACAA 4980858 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || ||||| |||| Sbjct 4980857 CATCCAGAAGGAGTCCACCCTGCACCTGGT 4980828 >seq40 Length=19049039 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 107563 TTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTG 107622 |||||||||| || |||| ||||| ||||| ||| | || ||| | |||| || Sbjct 15841126 TTTTTGTCAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCA 15841185 Query 107623 TCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGAC 107682 ||| | || || ||||| ||||| |||||| | || || |||||||| | Sbjct 15841186 TCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGCAGAGGC 15841245 Query 107683 TTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAA 107742 | || | ||| || || |||||||| ||| | || || | ||||||||||| || | Sbjct 15841246 TGATCTTTGCAGGCAAGCAGCTGGAAGACAACCGCACCCTGTCTGACTACAACATCCAGA 15841305 Query 107743 AGGAGTCTACGTTGCACATGGT 107764 ||||||| || ||||| |||| Sbjct 15841306 AGGAGTCCACCCTGCACCTGGT 15841327 >seq6 Length=51880498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || ||||||||| ||| | || | ||| || || |||||||| Sbjct 32416274 GATAAGGAAGGAATTCCTCCGGATCAGCAAAGATTGATCTTTGCTGGCAAGCAGCTGGAA 32416333 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | |||| | |||||||||||||| |||||||| || ||||| ||||| || Sbjct 32416334 GATGGCCAAACTTCATCTGACTACAACATTCAGAAGGAGTCCACTCTGCACCTGGTGCTG 32416393 Query 107769 AGATTGCGAGGGGG 107782 ||| | || || || Sbjct 32416394 AGACTCCGTGGTGG 32416407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398826140278069