Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq6 113 3e-20 seq65 111 1e-19 seq67 109 4e-19 seq17 100 2e-16 >seq6 Length=51880498 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATG--GTGCGAGAA 29631 |||||||| || || ||||| || || |||||||| || || | ||| || | | Sbjct 32416393 CAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAG--ATGAAGTTTGGCCA 32416336 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||||||| | |||||||||||||||||||| ||||| || || || Sbjct 32416335 TCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTA 32416276 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || ||| ||| ||| |||||| || || || | ||| | || || || || Sbjct 32416275 TCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTAGGGTGATG 32416216 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 32416215 GTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 >seq65 Length=10584338 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||||| ||| || || || || || |||||||| || |||| | || || || Sbjct 10480992 CAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAAAGTTCGGCCATA 10480933 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| ||||||||||||| | ||||| || || || || Sbjct 10480932 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGAATTCCTTCCTTATC 10480873 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | ||| ||| || |||||| || || || | || || || || || || || Sbjct 10480872 CTGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACCTCGAGGGTGATGGT 10480813 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || | ||| || ||||| | |||||| || Sbjct 10480812 CTTGCCTGTAAGGGTCTTGACAAAGACCTGCATCTT 10480777 >seq67 Length=9509266 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||||| || || ||| | || || |||||||| ||||| | | | || ||| Sbjct 6398368 CAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGGCCATC 6398309 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 6398308 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATC 6398249 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | ||| || ||| |||||| || || || | || || || || || || || Sbjct 6398248 CTGGATTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGTGATGGT 6398189 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | ||| || ||||| |||||||| Sbjct 6398188 CTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq17 Length=35549867 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||||| ||| || ||||| || || |||| ||| || || | | | || ||| Sbjct 25101821 CAGCACCAGATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCGGCCATC 25101880 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | ||| ||||||||||||||| ||||| || || || || Sbjct 25101881 TTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTCCTTTTC 25101940 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | ||| ||| ||| ||||| || || || | || | ||||| || || || Sbjct 25101941 CTGGATTTTGGCTTTTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGTGATGGT 25102000 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | || || || || |||||||| Sbjct 25102001 CTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 25102033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385170274874361