Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq129 178 1e-38 seq3 102 6e-16 seq46 98.7 7e-15 seq55 95.1 9e-14 seq21 87.8 1e-11 >seq129 Length=2073869 Score = 178 bits (196), Expect = 1e-38 Identities = 894/1412 (63%), Gaps = 22/1412 (2%) Strand=Plus/Minus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 |||||| ||||| |||||||| |||||||| | || || || || || |||||||| || Sbjct 760095 GGCAGTAACATTGAGAATACCGTTGGCATCGATGTCGAAGGTCACCTCGATTTGAGGAAC 760036 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 ||||| | ||||| ||||| || || | || ||||| || || || Sbjct 760035 TCCTCTGGGTGCAGGAGGGATTCCGGTCAGTTCGAAGCGGCCCAGCAGGTTGTTGTCACG 759976 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || || || || |||||| | | ||||| || | | || || || || || Sbjct 759975 TGTCAAGGCGCGCTCGCCCTCGTACACCTGGATCAGCACGCCGGGCTGGTTGTCCGAGTA 759916 Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || || | | | | || || || || | ||| | | || | ||| Sbjct 759915 GGTGGTGAAGATTTGTGTCTGCTTGGTGGGGATGGTGGAGTTGCGCTTGATCAGGACGGT 759856 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | ||| || ||||| || | || || || || |||| || || | || | || Sbjct 759855 CATCACACCGCCGGCTGTCTCCAGCCCCAGGGACAGGGGAGCCACGTCCAATAAAAGAAG 759796 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | || | |||||| | | ||| | | ||| ||||| || | ||||| ||||| Sbjct 759795 GTCCTGTACCTTTTCAGACTTGTCACCCATCAAAATGGCTGCCTGCACGGCAGCCCCATA 759736 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TG 281843 ||| || ||||||||||| || | ||| || || | || ||||| | | || Sbjct 759735 TGCTACTGCTTCATCAGGGTTGATGCTTTTGTTAAGGTCACGGCCGTTGAAGTAGTCCTG 759676 Query 281844 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 || || | | ||||| || || || | || || || || || ||||| || || | Sbjct 759675 AAGCAACCTCTGC-ACCTTGGGGATGCGCGTGGAGCCCCCTACCAAAACAATGTCGTGGA 759617 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 | | |||||||| || | |||| | | |||||||||| ||||| | | | | Sbjct 759616 TTTTAGCTTTATCCATCTTGGCATCCCGAAGAGCTTTTTCAACAGGTTCCAAGGTACCCC 759557 Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 282021 |||||||||||| ||| || ||||| ||| ||||| || || ||| | || || || Sbjct 759556 TAAACAAGTCTGCACACAGCTCTTCAAATCGGGCTCTGGT--GATGGACGTGTAGAAGTC 759499 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 || || || | | ||||| | || | | | || || || || || | || Sbjct 759498 GATGCCCTCATAAAGTGAATCGATCTCCAGGTTGGCCTGCGTGCTGGACGACAGCGTGCG 759439 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 282137 || || || || || || || | || | || | ||| || | ||| |||| Sbjct 759438 CTTGGCCCGCTCGCACGCCGTGCGCAGCCGCCGCACGGCGCGCTTGTTCTGGCTGATG-- 759381 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 || | || | || |||||||| || || || | | || || || || || | Sbjct 759380 --TCCTTCTTGTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCGGTTGTCGA 759323 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || |||| | || | || | ||| || | || | ||| | || || | Sbjct 759322 AGTCCTCGCCGCCCAGGTGCGTGTCGCCCGCCGTGGCCTTCACCTCGAAGATGCCGTCGT 759263 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TC 282316 | | | || | | |||||| |||||| ||||||| |||||| || || |||| || Sbjct 759262 CGATGGTCAGGATGGACACATCAAAGGTTCCTCCACCCAAATCAAAGATCAGGACATGTC 759203 Query 282317 ATT-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 | || || | | ||| ||| | ||||||||||| |||||||| || |||||||| Sbjct 759202 GCTCTCCCTGACCAGCTTT--ATCTAAACCATACGCAATGGCAGCAGCTGTGGGTTCATT 759145 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 || ||||| | ||||| || || ||||| |||||||| || ||||| || | || Sbjct 759144 GATGATTCTAAGCACATTGAGTCCTGCAATCACACCTGCATCCTTTGTGGCCTGGCGCTG 759085 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 || ||||| ||||| || || || || || || || | || ||| | || | | | Sbjct 759084 CGAGTCGTTGAAATAGGCTGGCACTGTGATCACAGCGTTGGTCACTGGGTAGCCCAAAAA 759025 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAA 282553 ||| || || | ||||| || | | | ||| || || || | || || |||| Sbjct 759024 AGCCTCAGCGGTCTCCTTCATCTTGGTGAGCACCATGGACGAGATCTCCTCCGGGTAGAA 758965 Query 282554 TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613 | ||| || || ||| || || | | || || || |||| || Sbjct 758964 AGCTTTTTG--CTCCCCTTTATAAGAAACCAGCACCTTGGGCTTGCCCCCTTCATTGATC 758907 Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 |||| || |||||| |||||| |||||||| ||| | |||||||| | ||| || Sbjct 758906 ACTTGGAAAGGCCAAAGTTTCATGTCTGATTGCACAACAGGATCATTAAACTTTCTGCCG 758847 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 |||| ||||| |||||||| | ||| || ||||| | || | || | ||||| Sbjct 758846 ATTAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCCACCTGGTTCTTGGCC 758787 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 || || || |||||| | || || || || || | || || || || ||||| || Sbjct 758786 GCGTCGCCGATCAGACGCTCCGTGTCCGTGAAGGCCACGTAGCTGGGCGTGGTGCGGTTG 758727 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACC 282825 || || || || || || || || || || || Sbjct 758726 CCCTGGTCGTTGGCGATGATCTCCACCTTGCC 758695 >seq3 Length=63406555 Score = 102 bits (112), Expect = 6e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||||||||| | | | || ||||| || ||||| |||| |||||||| | Sbjct 58826683 TCCATCTTCAACTGTGAGGATAGACACATCGAACGTGCCACCTCCCAGGTCAAAAATCAC 58826624 Query 282310 TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 ||||| |||| || || || || || ||||| |||| ||||||||||||||| Sbjct 58826623 CACATTTTTTTCAGCCTCAACCTTCTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGG 58826564 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||||| || || | | |||||| ||||||||||| |||| || ||||| ||||| || Sbjct 58826563 CTCATTGATGATCCAAAGAACATTTAGACCAGCAATGGTTCCAGCGTCTTTGGTGGCCTG 58826504 Query 282430 TCTTTGTGAATCGTTAAAATA 282450 | || || || || || || Sbjct 58826503 ACGCTGAGAGTCATTGAAGTA 58826483 >seq46 Length=14607294 Score = 98.7 bits (108), Expect = 7e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || |||| |||||||| ||||| ||||| || ||| | || |||||| | Sbjct 14417593 TGTACACTTATCCTGACTGAGGGAGACTCAGCCAAAACTTTAGCTGTTTCAGGCCTTGGT 14417534 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 ||| |||| ||||| | ||||| || ||||| |||||||||||| | | |||||| | Sbjct 14417533 GTTGTTGGTAGAGACAAATATGGGGTCTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 14417474 Query 400417 GATGCTAGTCCTAA 400430 || ||| || ||| Sbjct 14417473 GAAGCTTCTCATAA 14417460 >seq55 Length=13449054 Score = 95.1 bits (104), Expect = 9e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || || || ||||| ||||| ||||||||| | ||| || | || ||||||| Sbjct 5705557 TAGCTACCATTGCTTTTGGAATGGGCATTAATAAAGCTGATATTCGCAAAGTCATTCATT 5705616 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 |||| |||||||| | || ||| ||||| || |||||||||||||| || || |||| Sbjct 5705617 ACGGTACTCCCAAGGAAATGGAATCCTATTACCAGGAAATTGGTAGAGCTGGCCGGGATG 5705676 Query 131301 GA 131302 || Sbjct 5705677 GA 5705678 >seq21 Length=30942271 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| |||| ||||||||||||||| || || || || || | |||| Sbjct 873196 TTCTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCGTTGATGATCCTAAGAACA 873137 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| || || |||| || ||||| ||||| || | || || ||||| || || Sbjct 873136 TTGAGACCCGCGATGGTTCCAGCGTCTTTGGTGGCCTGCCGCTGAGAGTCGTTGAAGTAG 873077 Query 282452 GCAGGAACAGT 282462 || || || || Sbjct 873076 GCGGGCACTGT 873066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740118772939146