Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq67 172 1e-37 seq6 159 7e-34 seq65 154 3e-32 seq17 147 4e-30 seq24 143 5e-29 seq76 141 2e-28 seq40 118 2e-21 seq26 107 4e-18 seq3 107 4e-18 seq8 105 1e-17 seq58 98.7 2e-15 seq4 96.9 7e-15 seq13 95.1 2e-14 >seq67 Length=9509266 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || | ||||||||| | || ||||| || || |||||||||| | ||| || || Sbjct 6398368 CAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGGCCATC 6398309 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| || || || ||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 6398308 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATC 6398249 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || || || |||| ||||||||| || ||||| || || || || | || || || Sbjct 6398248 CTGGATTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGTGATGGT 6398189 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || | ||||| ||||| |||||||| Sbjct 6398188 CTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq6 Length=51880498 Score = 159 bits (176), Expect = 7e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || | ||||||||| || || ||||| || || || |||||| | || || || Sbjct 32416393 CAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGATGAAGTTTGGCCATC 32416334 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| || || || ||||||||||| | |||||| ||||| ||||| |||||||||||||| Sbjct 32416333 TTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATC 32416274 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || | || |||||||||||||| |||||||| || ||| | || | || || || Sbjct 32416273 CTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTAGGGTGATGGT 32416214 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || | |||||||| || |||||||| Sbjct 32416213 CTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 >seq65 Length=10584338 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 ||||||||||| || ||||| || || || || |||| | ||| || | ||| || || Sbjct 10480982 TGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAAAGTTCGGCCATATTCCAGCTGC 10480923 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| ||||| |||| |||||||||||||| || | || Sbjct 10480922 TTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGAATTCCTTCCTTATCCTGGACTTTG 10480863 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||| ||||| |||||||| || || || || | || || ||||||||||| Sbjct 10480862 GCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCTGTA 10480803 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| | |||||| Sbjct 10480802 AGGGTCTTGACAAAGACCTGCAT 10480780 >seq17 Length=35549867 Score = 147 bits (162), Expect = 4e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||||||| || || ||||| | || || ||||||| | ||| || ||||| || || Sbjct 25101831 TGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCGGCCATCTTCCAGCTGC 25101890 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||| | |||||||| ||||| ||||| || |||||||| || || || || Sbjct 25101891 TTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTCCTTTTCCTGGATTTTG 25101950 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||| ||| |||||||| || || | || | || || ||||||||||| Sbjct 25101951 GCTTTTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGTGATGGTCTTGCCTGTA 25102010 Query 82788 AACGTCTTTACAAATATCTGCATTAT 82813 | ||||| || || |||||||| || Sbjct 25102011 AGAGTCTTGACGAAGATCTGCATCAT 25102036 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | |||||| || || || || || || || || ||||| Sbjct 30593118 CCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 30593059 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || |||||||| || || | || || ||||| Sbjct 30593058 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGG 30592999 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| || || || || | | || || Sbjct 30592998 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGTGCTCAACC 30592939 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||||| |||| ||||| ||||| |||||||| Sbjct 30592938 TCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACAAAGATCTGCAT 30592892 >seq24 Length=26830293 Score = 143 bits (158), Expect = 5e-29 Identities = 165/221 (75%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 82590 CTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATT 82649 |||| ||||| || | |||||| || || || ||||| || || || ||||| || | Sbjct 11934363 CTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 11934304 Query 82650 CTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 || ||||| || || || || |||||||| || || || || || ||||| || ||| Sbjct 11934303 TGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCT 11934244 Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 |||||||| || ||||| || || ||||| || || || ||||| || || || |||| Sbjct 11934243 TCCTTATCCTGGATCTTGGCCTTGACATTCTCGAT-GTTTCATTGGGCTCCACCTCCAGG 11934185 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || |||||||| |||| ||||| ||||| |||||||| Sbjct 11934184 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 11934144 >seq76 Length=7797616 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || ||||| || | | ||| Sbjct 4980822 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCG 4980881 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| || || || || || ||||| || ||||||||| Sbjct 4980882 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 4980941 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || || || || | || || || |||| || || Sbjct 4980942 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 4981001 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| |||| ||||| || || ||||||||| Sbjct 4981002 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 4981037 >seq40 Length=19049039 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | |||||| || || || ||||| || || || ||||| Sbjct 15841345 CCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 15841286 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || |||||||| || || || || || ||||| Sbjct 15841285 AGGGTGCGGTTGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGG 15841226 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| || || || || | || || || Sbjct 15841225 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACC 15841166 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||| || || |||||||| || | ||||| ||||| Sbjct 15841165 TCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTGACAAA 15841128 >seq26 Length=25362064 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || | |||||| || || | ||||| || || || ||||| Sbjct 23898039 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTTCTTCTGGATGTTGTAGTCAGA 23897980 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | || ||||| || || || || |||||||| || || || || || ||||| Sbjct 23897979 CAAGGTGTGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGG 23897920 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 | |||||||||||||| ||| | || || ||||| || || || || | ||||| || Sbjct 23897919 GCTGCCTTCCTTATCTTGGATCATGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCAC 23897860 Query 82763 TTCCAAAGTTAT 82774 |||| ||||| Sbjct 23897859 CTCCAGGGTTAT 23897848 >seq3 Length=63406555 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || |||||||| || || |||||||| || || || |||| || | | |||| Sbjct 63015598 AGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGACAGACAGGGTACGGTTGTCT 63015657 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 | || || | || |||||||| | || || || || ||||| || ||||||||||| Sbjct 63015658 CCCAGCTGCCTGCCTGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 63015717 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || ||||| || || || || | || | || ||| || | ||| Sbjct 63015718 TGGATCTTCGCCTTGACATTCTCTATGGTGTCGCTGGGCTTGACCTCCGGGGTGGTGGTC 63015777 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| ||||| || || |||||||| Sbjct 63015778 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 63015809 >seq8 Length=54109746 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||||| | ||||||||||| | ||||| || || || || ||||| || Sbjct 34331772 GCTTTATGGTGGTACTTTGTATCTAAAGGTGTTGAATATTTGGACACAGTATTTTTTATC 34331831 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || |||| || ||||| ||| ||| | || |||||||| || | ||| |||||| Sbjct 34331832 CTACGGAAGAAAAACAATCAAGTTTCTTTCCTTCATGTATATCACCACTGTACGATGTTT 34331891 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 34331892 ACATTGTGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACAAG 34331934 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||| ||||||||||| ||| ||||||| || || ||||| |||||||| | ||||||| Sbjct 34333156 AAGCGTTTTTCGGAGCCCAGATGAATTCTTTCATTCATGTGATTATGTACTCGTATTATG 34333215 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | || | || | ||| || | || | |||||| | |||||||| ||||| || || | Sbjct 34333216 GGTTGACTGCATTTGGCCCATGGATTCAGAAGTATCTTTGGTGGAAACGTTACCTGACAA 34333275 Query 60429 TAATGCA 60435 | |||| Sbjct 34333276 TGTTGCA 34333282 >seq58 Length=12492363 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||| || || || ||||| || || || ||||| || | | || Sbjct 9398040 CGCAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 9398099 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| |||| || || |||||||| || || || || || ||||| || ||||||||| Sbjct 9398100 TCTTCCAGTTCCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 9398159 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| || || || ||| | || || || Sbjct 9398160 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 9398206 >seq4 Length=59374630 Score = 96.9 bits (106), Expect = 7e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || | || || || || ||||||| | || || ||||| || || Sbjct 23529062 TGTAGAGTGGACTCCGTTTGAATGTTGTAGTCAGATAAAGTTTGTCCATCTTCCAGCTGC 23529121 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||| || ||| | ||| || |||| ||||| | ||||||||||||||| || || Sbjct 23529122 TTGCCAACAGCGATCAATCTGTGCTGATTAGGAGGAACTCCTTCCTTATCTTGGATTTTG 23529181 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||| ||||||| ||| ||| ||| || || | | | || ||||||||||| Sbjct 23529182 GTTTTCCCATTTTCTATCATATTTGAAGGCTCAACCTTGAGGATGATGGTCTTGCCTGTA 23529241 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| ||| ||| Sbjct 23529242 AGGGTCTTGACAAAGTTCTACAT 23529264 >seq13 Length=39823089 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 82608 TGCAGAGTAGA--TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTT 82665 ||| |||| || ||| | ||| | || || ||||||| |||| | ||||| ||| Sbjct 7253875 TGCTGAGTGGACATTCCTGCTGAAAGTTGTAGTCAGATAAAATTTGTTCATCTTCAGGTT 7253934 Query 82666 GTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCT 82725 | || |||| ||||| |||| ||| ||||| ||||| |||||||||||||| || | | Sbjct 7253935 GCTTGCCAGTGAAGATCAGTCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTTT 7253994 Query 82726 TTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 | |||| ||||||||| |||| || || | || | || | ||||| |||| Sbjct 7253995 TGACTTTCACATTTTCA---GTATGCAGGGGCTCAGCATCAAGGGTGCTGGTCTTCCCTG 7254051 Query 82786 TCAACGTCTTTACAAATATCTGCAT 82810 | | ||||| ||||| ||||||| Sbjct 7254052 TTAGAGTCTTGACAAAGGTCTGCAT 7254076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981696107352719