Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq8 105 1e-17 >seq8 Length=54109746 Score = 105 bits (116), Expect = 1e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||||| | |||||||||| | ||||| || || ||||| ||||| || Sbjct 34331772 GCTTTATGGTGGTACTTTGTATCTAAAGGTGTTGAATATTTGGACACAGTATTTTTTATC 34331831 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || |||| || ||||| ||| || || || |||||||| || | ||| |||||| Sbjct 34331832 CTACGGAAGAAAAACAATCAAGTTTCTTTCCTTCATGTATATCACCACTGTACGATGTTT 34331891 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | || ||||| ||| ||||||| || || Sbjct 34331892 ACATTGTGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 34331932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903293519398560