Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq42 165 8e-36 seq76 150 2e-31 seq6 141 9e-29 seq49 138 1e-27 seq40 132 5e-26 seq24 129 6e-25 seq17 129 6e-25 seq3 114 1e-20 seq58 107 2e-18 seq26 87.8 2e-12 seq67 84.2 2e-11 seq30 82.4 7e-11 >seq42 Length=18384968 Score = 165 bits (182), Expect = 8e-36 Identities = 158/200 (79%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || ||| ||| | ||||| |||||||||| Sbjct 13800095 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCA-TCCTCCAGCTGCTTGCT 13800037 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 13800036 GGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTT 13799977 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| |||||||||| |||| ||||| ||| ||||| ||||| || Sbjct 13799976 GACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGT 13799917 Query 133643 TTTTACGAAAATCTGCATGG 133662 |||||||| |||||||||| Sbjct 13799916 CTTTACGAAGATCTGCATGG 13799897 >seq76 Length=7797616 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| ||| || ||||||||||| Sbjct 4980839 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCC 4980898 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||||||||||||||||||||| || |||||| ||| Sbjct 4980899 TGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTT 4980958 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 4980959 GACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 4981018 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 4981019 CTTCACGAAGATCTGCAT 4981036 >seq6 Length=51880498 Score = 141 bits (156), Expect = 9e-29 Identities = 153/199 (77%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 47505256 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 47505198 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| ||||||||||||||||| | | |||||| || Sbjct 47505197 CTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTACCTG-GATCTTGGCCT 47505139 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | |||||| |||| ||||| || | ||||| ||| ||||||||||| | Sbjct 47505138 TGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 47505079 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 47505078 TCTTCACGAAGATCTGCAT 47505060 >seq49 Length=14824766 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| ||| || ||||||||||| Sbjct 11086293 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCC 11086234 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||||||||||||||| || || |||||| ||| Sbjct 11086233 TGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 11086174 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| |||| ||||| || | ||||| ||| ||||| ||||| || Sbjct 11086173 GACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 11086114 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 11086113 CTTCACGAAGATCTGCATG 11086095 >seq40 Length=19049039 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| ||| || ||||||||||| Sbjct 15841316 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCTTCCAGCTGCTTGCC 15841257 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||||||||||||||||||||| || |||||| ||| Sbjct 15841256 TGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTT 15841197 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||||| ||||||| || || | ||||| ||| |||||||| || || Sbjct 15841196 GACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTTAGGGT 15841137 Query 133643 TTTTACGAAAA 133653 || || |||| Sbjct 15841136 CTTGACAAAAA 15841126 >seq24 Length=26830293 Score = 129 bits (142), Expect = 6e-25 Identities = 151/200 (76%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 11934340 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCA-TCTTCCAGCTGCTTGC 11934282 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| |||||||||||||||||||| || |||||| || Sbjct 11934281 CTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 11934222 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | || || |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 11934221 TGACATTCTCGA-TGTTTCATTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 11934163 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 11934162 TCTTCACAAAGATCTGCATG 11934143 >seq17 Length=35549867 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| || || || ||||| || || ||| | | | || || |||||||||| Sbjct 30593089 GGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 30593031 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| || |||||||||||||||||||||||| || |||||| || Sbjct 30593030 CTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 30592971 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | |||||| || |||| || || | ||||| ||| |||| |||||| | Sbjct 30592970 TGACATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGGTCTTGCTGGTCAGGG 30592911 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 30592910 TCTTCACAAAGATCTGCATG 30592891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATC-GCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| | ||||| || | | | | | | | || || ||||||||||| Sbjct 25101837 GTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCGGCCA-TCTTCCAGCTGCTTGCC 25101895 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | | || | ||||| || ||||| ||||||||||| || ||| ||| || | Sbjct 25101896 AGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTCCTTTTCCTGGAT-TTTGGCTT 25101954 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | || || | ||| || | |||||| | || | ||||| ||| ||||| || |||| Sbjct 25101955 TTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGTGATGGTCTTGCCTGTAAGAG 25102014 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 25102015 TCTTGACGAAGATCTGCAT 25102033 >seq3 Length=63406555 Score = 114 bits (126), Expect = 1e-20 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||||||||||||||| || ||||| | || || ||| ||| | | Sbjct 63015604 AAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGACAGACAGGGT--ACGGTTGTCTCCCA 63015661 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||| |||| || | || | || ||||||||| ||||||||||||||||| || || Sbjct 63015662 GCTGCCTGCCTGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGA 63015721 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | ||| | |||||| |||||| || || |||| ||| |||| Sbjct 63015722 TCTTCGCCTTGACATTCTCTATGGTGTCGCTGGGCTTGACCTCCGGGGTGGTGGTCTTGC 63015781 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||| || || ||||| ||||||||| Sbjct 63015782 CGGTCAAGGTCTTCACGAAGATCTGCATG 63015810 >seq58 Length=12492363 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 || ||||||||||||||||||||||||||| || |||||| ||||| | ||| | Sbjct 9397901 CCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGAT 9397960 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 |||| | ||||||| || || | || || ||| ||||||||||| || || ||||| || Sbjct 9397961 GGTGTTGCTGGGCTCGACCTCCAGGGGGATGGTCTTGCCGGTCAGGGTCTTCACGAAGAT 9398020 Query 133655 CTGCATG 133661 ||||||| Sbjct 9398021 CTGCATG 9398027 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || || | ||||| Sbjct 9398057 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGTTCCTTGC 9398115 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||||||||||||||||||||| || |||||| || Sbjct 9398116 CTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 9398175 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCAC 133612 ||| | ||| | ||||| ||||||| || Sbjct 9398176 TGACATTCTCGATGGTGTCACTGGGCTCGAC 9398206 >seq26 Length=25362064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 23898009 GGTGGACTTCTTCTGGATGTTGTAGTCAGACAAGGTGTGGCCA-TCTTCCAGCTGCTTGC 23897951 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| |||||| |||||||||| || |||| | || Sbjct 23897950 CGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGCTGCCTTCCTTATCTTGGATCATGGCCT 23897891 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGT 133621 ||| | ||| | |||||| |||| ||||| || | ||| Sbjct 23897890 TGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGT 23897851 >seq67 Length=9509266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATC-GCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| |||| ||||| || |||||||| | | | | | | | || || ||||||||||| Sbjct 6398352 GTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGGCCA-TCTTCCAGCTGCTTGCC 6398294 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || | ||||| || ||||| || |||||||| || ||| ||| |||| Sbjct 6398293 AGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGAT-TTTGGCTT 6398235 Query 133583 -GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | || | || || | |||||| || |||| ||||| ||| ||||| || || | Sbjct 6398234 ATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTAAGGG 6398175 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 6398174 TCTTGACAAAGATCTGCAT 6398156 >seq30 Length=25365230 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/160 (72%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | ||||||| | || | || || ||||||||||| || |||||||| || | | Sbjct 16538415 TCCTCCAACTGCTTGTCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTCG 16538474 Query 133566 TCGGTGATCTTTTGCTTGA-----GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGG 133620 || |||||| ||||| | | | || |||||| |||||||||| || | | Sbjct 16538475 TCCTGGATCTTCGCCTTGAAAAACGTTTTTGAA-GGTGTCGCTGGGCTCCACCTCAAGCG 16538533 Query 133621 TGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | | ||| ||||| ||||| || || | ||| |||||||| Sbjct 16538534 TAATGGTGTTGCCTGTCAGGGTCTTCATGAAGATCTGCAT 16538573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483357828398040