Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq42 95.1 8e-15 seq49 86.0 4e-12 >seq42 Length=18384968 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || || ||| |||||| || |||||||| ||||| Sbjct 13800125 CCACCCCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGAC 13800066 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || | |||||| || | ||||||||| || | || Sbjct 13800065 AGAGTGCGACCATCCTCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGG 13800006 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | || | || | ||||||||| | ||||| Sbjct 13800005 ATGCCCTCCTTGTCCTGGATCTTG-GTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCAC 13799947 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || || || | || ||||| ||||||||||| || Sbjct 13799946 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATGGT 13799896 >seq49 Length=14824766 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || || || |||||| |||| |||| || Sbjct 11086298 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGC 11086239 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| |||| | |||||| || | || | |||||||| || || || Sbjct 11086238 TTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 11086179 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | ||| || | ||||||||| | |||||| || | ||||| || || || || Sbjct 11086178 GCCTTGA-CATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGT 11086120 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 11086119 CAGGGTCTTCACGAAGATCTGCAT 11086096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328662252640320