Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq65 100 7e-16 >seq65 Length=10584338 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||| | ||| ||| || || ||||| || || ||||| | || || || || || Sbjct 10480783 CAGGTCTTTGTCAAGACCCTTACAGGCAAGACCATCACCCTCGAGGTTGAGCCCTCGGAT 10480842 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || |||| | || || || ||||||||| | ||| || Sbjct 10480843 ACGATAGAAAACGTAAAAGCCAAAG-TCCAGGATAAGGAAGGAATTCCTCTGGATCAGCA 10480901 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||| ||||| || || |||||| ||||| |||| | ||||| | || |||||| | Sbjct 10480902 AAGACTGATCTTTGCTGGCAAGCAGCTGGAATATGGCCGAACTTTATCGGACTACAACAT 10480961 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| || || || ||||||| || Sbjct 10480962 TCAGAAGGAGTCTACTCTGCATCTGGTGCTGAGACTCCG 10481000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181663004394741