Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq22 104 7e-19 seq2 104 7e-19 seq84 100 9e-18 seq76 100 9e-18 seq117 98.7 3e-17 seq78 98.7 3e-17 seq1 84.2 7e-13 >seq22 Length=31030240 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1196972 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1197031 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1197032 CCGGGTTTCGGC 1197043 Score = 98.7 bits (108), Expect = 3e-17 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||| | || ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1188913 TGGCTGGAATATCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 1188972 Query 2827 CCCCGGG 2833 |||||| Sbjct 1188973 TCCCGGG 1188979 >seq2 Length=73975804 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 14087049 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 14087108 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 14087109 CCGGGTTTCGGC 14087120 >seq84 Length=5970396 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 3405736 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 3405677 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 3405676 CCCGGGTTTCGGC 3405664 >seq76 Length=7797616 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 4995823 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 4995764 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 4995763 CCCGGGTTTCGGC 4995751 >seq117 Length=2603576 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1481731 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1481790 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1481791 CCGGGTTTCGGC 1481802 Score = 96.9 bits (106), Expect = 1e-16 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1635129 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 1635186 >seq78 Length=8204013 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 5065594 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5065535 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5065534 CCGGGTTTCGGC 5065523 Score = 91.5 bits (100), Expect = 5e-15 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||||| ||||||||||||||||||| |||||||||| | |||| Sbjct 1729636 GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGATCCCTGGTTCGATCCCG 1729695 Query 2832 GGCTT 2836 || || Sbjct 1729696 GGTTT 1729700 >seq1 Length=83735184 Score = 84.2 bits (92), Expect = 7e-13 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| | Sbjct 7728374 CTGAAATAGCTCAGCTGGGAGAGTGTTAGACTGAAGGTCTAAAGGTCCCTGGTTCAATTC 7728433 Query 2830 CGGGCTTCAGC 2840 | | |||||| Sbjct 7728434 CTGATTTCAGC 7728444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847793467545