Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3 255 7e-63 seq6 158 1e-33 seq4 150 2e-31 seq11 136 5e-27 >seq3 Length=63406555 Score = 255 bits (282), Expect = 7e-63 Identities = 248/319 (78%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||| ||||||||||||| | | || |||||||| || || || | |||||||| || Sbjct 25948856 GTGTTGACCCAGGATGAAAAGCAGCAACTGAACACACCTGCTTCTTTAAAATGCTCTCTA 25948797 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 ||| |||| |||||||| || |||| || |||||||||| ||| | | ||||| Sbjct 25948796 CAGTCTTCCCAGGAGGTCTTGGTTGTGACATGGCAGAAAAAGAAGGCTGTGAGCCCAGAA 25948737 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 || ||| | || || ||||| |||||||||| || |||||||| || |||| ||||||| Sbjct 25948736 AATATGGTGACCTTCAGCAAGAACCACGGGGTTGTCGTCCAGCCTGCCTATAGGGACAAG 25948677 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||| ||||| || || || ||||| |||||||| || ||||| || ||| | Sbjct 25948676 TTAAACATCACGCAGCTGGGGCTGCAGAACTCCACCATCACCTTCTGGAACACGACCCTG 25948617 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| ||||||||||||| || || ||||| || |||||||| ||||| ||||| || Sbjct 25948616 GAGGATGAGGGGTGCTACATGTGTCTTTTTAATACTTTTGGGTCGGGGAAGATCTCAGGA 25948557 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||||||| Sbjct 25948556 ACGTCCTGCCTCACCCTCT 25948538 Score = 203 bits (224), Expect = 4e-47 Identities = 192/245 (78%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 |||||||||| |||| || || || ||||| ||||| |||||||| || ||||| || Sbjct 25946436 GTGCAGCCCATAGTGTCCCTCCAGTACAAATTCTTTGAAGACCACCTAAATATCACTTGC 25946377 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||| ||||| | ||| ||| | |||||| || | ||||||| ||||| Sbjct 25946376 TCTGCCACTGCTCGCCCAGCCCCTGTGATCTCCTGGAAGGTTGCTGGGTCAGGGATTGAG 25946317 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| ||| || ||| | ||||| || || ||||| |||||||| ||||| Sbjct 25946316 AACAGTACTGAGAGTCTATCACATCCCAATGGGACCACGTCTGTCACCAGTGTCCTCCAT 25946257 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| |||| |||||||| |||||||| ||| |||||| ||| Sbjct 25946256 GTCAAAGACCCCAAGACTCAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGCACCTTGGA 25946197 Query 171633 AATGT 171637 || || Sbjct 25946196 AAAGT 25946192 >seq6 Length=51880498 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || || || || | ||||||||||||||| | ||||||||| |||||||| Sbjct 43802744 CTTCAGTCCAGTGACATGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 43802685 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| |||||||||||||||| |||||| || ||||| |||| Sbjct 43802684 GGGCACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAACTGGCAGGACAGCTCGCCGTT 43802625 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | ||||| |||||||| || ||||| || ||||| ||||| Sbjct 43802624 CACTACGTAGAACTGGCAGAGAGCATGGCATGGGGGCAGGGCCAT 43802580 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||||||| || || |||| Sbjct 43799753 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCCTCCTCTCTGGTT 43799694 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| || | | ||||| || |||| ||| || |||||||| ||||||| Sbjct 43799693 GAGAATCCAAGGCTGTCCAGAAATTCTCGGGAAGCGTTCGCATCCCAGATTTTCACTCCC 43799634 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGA 147439 ||||| || || || |||| | ||||| ||| ||| Sbjct 43799633 TTGGCAGACAGTTCTTTAGCATTTGTGGATCCCTGGA 43799597 >seq4 Length=59374630 Score = 150 bits (166), Expect = 2e-31 Identities = 132/167 (79%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||| ||||| ||||||||||||||||| |||||||| || ||||||||| Sbjct 41622926 AGGGTTACCTGGGATGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTGAAGGAGGTGA 41622985 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| |||||||| ||||| ||||| |||||||| || |||| Sbjct 41622986 TGCCCCAGGCGGAGAATCA------------TGGCCCAGACATCAAGGAGCACGTGAACT 41623033 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | || ||||||||||| ||||| || || |||||||||| | |||| Sbjct 41623034 CGCTCGGGGAAAAGCTGAAGACTCTCCGACTGAGGCTGCGCCAATGT 41623080 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| ||||| |||||||| || || || ||||||| Sbjct 41625063 AGCTCCAAGAGAAAGGTGTGTACAAAGCCATGAGCGAGTTTGACATCTTCATCAACTACA 41625122 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||| | |||||||| || | |||| Sbjct 41625123 TAGAAACCTACATGACCACGAGGATGA 41625149 >seq11 Length=41765191 Score = 136 bits (150), Expect = 5e-27 Identities = 273/401 (68%), Gaps = 8/401 (2%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||||||||| ||| | |||| || | ||||||| ||||||| || | ||||||| | Sbjct 15532325 TACTCTCTGGTATTTGTCATTGGCCTGGTGGGCAATGTCCTGGTGGTCTTGGTCCTCACA 15532266 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 |||| |||||||| || |||||||| ||||| ||| |||||| ||||| || |||| Sbjct 15532265 CAGTATAAGAGGCTACAGAGCATGACCAGCATCTACCTCTTCAACTTGGCCATTTCTGAC 15532206 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGGG 8790 ||||| | | ||||| | ||||| |||||| ||| | || ||| | || Sbjct 15532205 CTGCTCTTCCTCTTCACATTGCCCTTCTGGATTGACT-----ACAGGCTGAA-GGATGAC 15532152 Query 8791 TGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTAC 8850 |||| | | | |||||||||| | | || || | || | | ||||| Sbjct 15532151 TGGGTTTTTGGCAATGCCATGTGTAAGCTCCTCTCTGGGCTCTATTACATAGGCTTGTAC 15532092 Query 8851 AGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGCG 8910 ||||| ||| | || ||||||||| |||| || |||||||| | || | || |||| Sbjct 15532091 AGCGAGGTCTTCTTCATCATCCTGCTGACCCTTGACAGGTACTTGGCCATCGTCCACGCT 15532032 Query 8911 GTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTGG 8970 ||| | || || ||| ||| | | ||||||||| |||||||| | ||||| Sbjct 15532031 GTGTTCGCCCTGCGGGCCCGGACGGTCACCTTTGGCATCCTCACCAGCCTCATCACCTGG 15531972 Query 8971 ATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTAT-CTTTT 9010 ||||| | |||| |||| || | |||| | ||||| Sbjct 15531971 GGCCTGGCCATCTTGGCTTCCAT-CCCGGGTTTGTACTTTT 15531932 Score = 120 bits (132), Expect = 4e-22 Identities = 209/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 || || |||||||| | |||| | | ||||| | ||||| | | |||||| Sbjct 15559635 TATTCCCTGGTGTTCATCGTTGGTTTCTTGGGCAACACTATGGTGGTGGTGATCCTCACG 15559694 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || ||||||||||| || || ||||||||||||| |||||||||||||||| | |||| Sbjct 15559695 AAATACAAGAGGCTTAGAATTATGACCAACATCTACCTGTTCAACCTGGCCATCTCTGAC 15559754 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGGG 8790 |||| | | ||||| || ||||| |||||||||| || || |||| ||||| Sbjct 15559755 TTGCTCTTTCTCTTCACTCTTCCCTTCTGGATTCACT--ATATCAGGCGGAAAGAGTGGG 15559812 Query 8791 TGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTAC 8850 || ||| || |||||| ||||| | ||| | | | ||| ||||| Sbjct 15559813 TG----TTTGACAACAGCATGTGCAAGTTCCTCTCGGGGTTGTATTCCCTGGGCTTGTAC 15559868 Query 8851 AGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGCG 8910 || || || | || || |||||| |||| |||||||||| || || | ||| | ||| Sbjct 15559869 AGTGAGATCTTTTTCATAATCCTGCTGACAATGGACAGGTACCTGGCCATCGTGCATGCG 15559928 Query 8911 GTG 8913 ||| Sbjct 15559929 GTG 15559931 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 |||||||||| | ||| | ||| ||||||||| |||||||||||||||||||| | Sbjct 15531610 TGGACATGGCTACCCAAGTGACAGAGGTGATCGCCTATACCCACTGCTGCGTCAACCCTG 15531551 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| | ||||||||||| | ||||| Sbjct 15531550 TCATCTATGTCTTTGTGGGCGAGAGGTTCC 15531521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583411993394400