Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq25 197 2e-44 seq117 188 1e-41 seq37 188 1e-41 seq84 185 1e-40 seq58 145 1e-28 seq2663 125 1e-22 seq43 104 3e-16 seq14 95.1 2e-13 seq72 86.0 9e-11 >seq25 Length=26962222 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| || || |||| || |||| ||||| Sbjct 309456 TACAAGGTGCTCAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 309509 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| || |||||| ||| Sbjct 309510 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCAGCGAGGCGTCGCGC 309569 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||||||| | ||||| ||||||||| Sbjct 309570 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGCGAGGTGCAGACGGCCGTGCGC 309629 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| || |||||||||| Sbjct 309630 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 309678 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| || || |||| || |||| ||||| Sbjct 312350 TACAAGGTGCTCAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 312297 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| || |||||| ||| Sbjct 312296 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCAGCGAGGCGTCGCGC 312237 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||||||| | ||||| ||||||||| Sbjct 312236 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGCGAGGTGCAGACGGCCGTGCGC 312177 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| || |||||||||| Sbjct 312176 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 312128 >seq117 Length=2603576 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||||||||||||||||||||| || || |||| || |||| ||||| Sbjct 2193555 TACAAGGTGCTCAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 2193502 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| |||||| ||| Sbjct 2193501 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 2193442 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 2193441 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2193382 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 2193381 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2193333 Score = 168 bits (186), Expect = 1e-35 Identities = 173/225 (77%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 724918 AGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGA 724977 ||||||| |||||||||||||| || || |||| || |||| ||||| | Sbjct 2294540 AGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATGGGCA 2294593 Query 724978 TCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGG 725037 ||||||||||||| ||||||||||| |||| ||||||| |||||| ||||||| Sbjct 2294594 TCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGCCTGG 2294653 Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097 ||| || |||||||||| || ||| | || ||||||||||| |||||||||||| Sbjct 2294654 CGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGC 2294713 Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| |||||| ||||||| ||||||| | ||||||||||||| Sbjct 2294714 TGCTGCCCGGCGAGCTGGCCAAGCACGCCATGTCCGAGGGCACCA 2294758 Score = 104 bits (114), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| || ||| | || ||||||||||| |||||| Sbjct 2224948 CGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 2225007 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||||| ||||||| |||||| || ||||||||||||| Sbjct 2225008 CGCCTGCTGCTGCCGGGCGAGCTGGCCAAGCACGCTGTGTCCGAGGGCACCA 2225059 >seq37 Length=20254952 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| |||| |||| || |||| ||||| Sbjct 236558 TACAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 236505 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| ||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 236504 GGCATCATGAATTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 236445 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| ||||||||| Sbjct 236444 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGC 236385 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 236384 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 236336 Score = 185 bits (204), Expect = 1e-40 Identities = 178/227 (78%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| |||| |||| || |||| ||||| Sbjct 175347 TACAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 175294 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| ||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 175293 GGCATCATGAATTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 175234 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 175233 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 175174 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| |||||| ||||||| ||||||||| ||||||||||| Sbjct 175173 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 175127 >seq84 Length=5970396 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 3613132 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 3613185 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 3613186 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 3613245 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| ||||||||| Sbjct 3613246 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGC 3613305 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 3613306 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3613354 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 3361072 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 3361019 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 3361018 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 3360959 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 3360958 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 3360899 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 3360898 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3360850 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 3370027 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 3370080 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 3370081 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 3370140 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 3370141 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 3370200 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 3370201 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3370249 >seq58 Length=12492363 Score = 145 bits (160), Expect = 1e-28 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||||||||| |||||||||||||| || ||| |||| || |||| || Sbjct 49317 ATATACAAGGTGCTGAAGCAGGTGCACCCTGATAC---TGG--CATC-TCATCCAAGGCC 49370 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || ||||||| || || | || ||||| ||||| Sbjct 49371 ATGAGCATCATGAATTCTTTTGTCAGTGATATTTTTGAACGCATTTCAGGGGAGGCGTCG 49430 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| || ||| | || ||||||||||| |||||| Sbjct 49431 CGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 49490 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 49491 CGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 49542 >seq2663 Length=4024 Score = 125 bits (138), Expect = 1e-22 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 724996 ACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCA 725055 ||||||| |||| ||||||| |||||| |||||||||| || |||||||||| Sbjct 2209 ACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGCCTGGCGCACTACAACAAGCGCT 2268 Query 725056 ACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGG 725115 || ||| | || ||||||||||| |||||||||||| | ||| |||||| |||| Sbjct 2269 CGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGCGAGCTGG 2328 Query 725116 CCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||||||||| ||||||||||||| Sbjct 2329 CCAAGCACGCCGTGTCCGAGGGCACCA 2355 >seq43 Length=18566959 Score = 104 bits (114), Expect = 3e-16 Identities = 173/246 (70%), Gaps = 12/246 (5%) Strand=Plus/Minus Query 724901 CTCGT--CCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| ||| | | ||||||| |||||||||||||||| || | || | |||| Sbjct 16788578 CTCGTGGCCTATGTGTACAAGGCGCTCAAGCAGGTGCACTCCAGCACTGA-----CATCT 16788524 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 | |||| ||||| ||||||||||| |||||||| ||||| || | ||||| | | Sbjct 16788523 TGTC-CAAGACCATGGACATCATGAACTCATTTGTCAAGGACATATTCAAGCGCATAGCC 16788465 Query 725019 ACCGAGGCCGGTCG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 | |||||| |||| |||| || || ||||||| | || || | | |||| Sbjct 16788464 AGCGAGGC--GTCGCACCTGTTGCACTACAACAAGTACTCAACCATTATGTTGTGAGAGA 16788407 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||| || |||||| |||| | || | | || |||||| ||||| |||| ||| ||| Sbjct 16788406 TCCGCACAACCGTGCACCTGCTGCTGTCCAGTGAGCTGGCCGGGCACACCGTGTCCAAGG 16788347 Query 725137 GCACCA 725142 |||||| Sbjct 16788346 GCACCA 16788341 >seq14 Length=40210847 Score = 95.1 bits (104), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| ||||| ||| | ||||||||| ||||| Sbjct 6353509 GAGCCGCTGCTGCGGGAGAACCCCCGGCGCTTCGTCATCTTCCCCATCGAGTACCACGAC 6353568 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || ||||||||||| ||||| ||||| ||||||||||| Sbjct 6353569 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGGT 6353621 >seq72 Length=8522026 Score = 86.0 bits (94), Expect = 9e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1818122 GGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGT 1818181 ||||||||| |||| ||| ||| | | |||||||||| ||||||||| ||| |||| Sbjct 6508097 GGGCACGCCGACCTGGTCGATGGAGAGGTTGGGGTCGGGGGTGATGACGGTGCGGGCGGA 6508156 Query 1818182 AAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCG 1818241 |||| || ||||||||||| || || || | | ||| ||||||||||| | ||| Sbjct 6508157 GAAGTCCACTCGCTTGCCCATCAGGTTTCCTCGCACGCGGCCTTCCTTGCCCTTCAGCCG 6508216 Query 1818242 CT 1818243 || Sbjct 6508217 CT 6508218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176806075396202