Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq49 131 2e-25 seq76 127 2e-24 seq6 118 1e-21 seq42 113 4e-20 seq17 113 4e-20 seq40 105 6e-18 seq24 100 3e-16 seq67 91.5 1e-13 seq65 89.7 5e-13 >seq49 Length=14824766 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || |||| ||||||||||| || ||||| Sbjct 11086287 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAA 11086228 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || || || ||| |||||| ||| | | | Sbjct 11086227 GATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTGACATT 11086168 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||||| | ||||||||||| ||||| || || || |||| || ||||| Sbjct 11086167 TTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 11086108 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 11086107 GAAGATCTGCAT 11086096 >seq76 Length=7797616 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || |||| ||||||||||| || ||||| Sbjct 4980845 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCTGCAAA 4980904 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || ||||| ||| |||||| ||| | | | Sbjct 4980905 GATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 4980964 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || |||| || ||||| Sbjct 4980965 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4981024 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 4981025 GAAGATCTGCATT 4981037 >seq6 Length=51880498 Score = 118 bits (130), Expect = 1e-21 Identities = 142/192 (74%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 47505250 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 47505191 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || ||||| || |||||| ||| | | | Sbjct 47505190 GATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTT-ACCTGGATCTTGGCCTTGACATT 47505132 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||||||||| ||||| || || || |||| || ||||| Sbjct 47505131 CTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 47505072 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 47505071 GAAGATCTGCAT 47505060 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||| ||||| || | || |||||| ||||||||||| || | Sbjct 32416407 CCACCACGGAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAT 32416348 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| | | || ||||||||||| || ||||| ||||| | ||||| |||| |||| Sbjct 32416347 GAAGTTTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGA 32416288 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| || ||| || || | | || | | ||| || | || | Sbjct 32416287 ATTCCTTCCTTATCC-TGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTC 32416229 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || ||||| | || || || || |||||||| Sbjct 32416228 CTCTAGGGTGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 >seq42 Length=18384968 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| ||| || || |||||||| |||| || || || | || || Sbjct 13800108 CACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTC 13800049 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| | ||||| || | ||||||||||||| || | || |||||||||| Sbjct 13800048 CAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 13799989 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | || | | |||||||| | |||||||| | ||||| || || Sbjct 13799988 GATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTT 13799929 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| || || || || |||||||| Sbjct 13799928 GCCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq17 Length=35549867 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 30593083 CTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 30593024 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || || |||||| | ||| | || ||||| ||| |||||| ||| | | | Sbjct 30593023 GATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 30592964 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| || ||||||| ||||| || || | |||| || ||||| Sbjct 30592963 CTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAC 30592904 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 30592903 AAAGATCTGCAT 30592892 >seq40 Length=19049039 Score = 105 bits (116), Expect = 6e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | ||| ||||||||||| || ||||| Sbjct 15841310 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCTTCCAGCTGCTTGCCTGCAAA 15841251 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || ||||| ||| |||||| ||| | | | Sbjct 15841250 GATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 15841191 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || || || | || || || Sbjct 15841190 CTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTGAC 15841131 Query 35725 AAA 35727 ||| Sbjct 15841130 AAA 15841128 >seq24 Length=26830293 Score = 100 bits (110), Expect = 3e-16 Identities = 138/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| | | || ||||||||||| || ||||| Sbjct 11934334 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAA 11934275 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||| | || ||||| ||| |||||| ||| | | | Sbjct 11934274 GATCAGCCTCTGCTGTTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACA-T 11934216 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || | | |||||||||| ||||| || || || |||| || ||||| Sbjct 11934215 TCTCGATGTTTCATTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 11934156 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 11934155 AAAGATCTGCAT 11934144 >seq67 Length=9509266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||| | |||| ||||| || | || | |||||| |||||||||||||| | Sbjct 6398380 CCACCAC--AGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGAT 6398323 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || ||||||||||| || ||||| |||| | ||||| || | |||| Sbjct 6398322 AAACTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGA 6398263 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| ||| |||| | | || | | || || | || || Sbjct 6398262 ATTCCTTCCTTATCCTGGAT-TTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAAC 6398204 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || ||||| | || || ||||| |||||||| Sbjct 6398203 CTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq65 Length=10584338 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||| ||||| ||| | ||| |||||| ||||||||||| || | Sbjct 10481006 CCACCACGGAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 10480947 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| | | ||||||||||| || ||||| |||| | ||||| ||| |||| Sbjct 10480946 AAAGTTCGGCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGA 10480887 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| || |||| || || | || | | ||| || | || || Sbjct 10480886 ATTCCTTCCTTATCC-TGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAAC 10480828 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || || | || || ||||| | |||||| Sbjct 10480827 CTCGAGGGTGATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCAT 10480780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450734878498680