Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-22 seq63 93.3 6e-14 >seq4 Length=59374630 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 213994 CCAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGT 214053 |||| | || || || ||||| |||||||| || |||| || | | | | | ||| | Sbjct 56647949 CCAGGTCATCGATGGAGAAGTGTACCCTCCCACAGTCAGAGACACACAGGCGGAGATGTT 56648008 Query 214054 TTACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACT 214113 ||| ||| ||| || || || | || ||||| |||| | || ||||||| || Sbjct 56648009 CTACCCGCCCCACGTCCCTGAGCAGCTGCGCTTCGCTGTGGGCCAGGAAGTGTTTGGTCT 56648068 Query 214114 CGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGA 214173 ||||| || | ||| ||||||||| |||||| | | ||||| ||| | || ||||| Sbjct 56648069 GGTGCCTGGCCTGATGATGTACGCCACAATCTGGTTACGGGAGCATAACCGAGTGTGCGA 56648128 Query 214174 CGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||||| || || ||||| || |||||| ||||||| ||| | ||||||| Sbjct 56648129 CGTGCTCAAGCAGGAGCATCCCGAATGGGACGACGAGCAGTTATTCCAGA 56648178 >seq63 Length=10623516 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| |||| || || |||| || ||||| | ||||| | ||||||||| Sbjct 10356613 TGGGCCAGGAGGTGTTCGGGCTGCTGCCGGGACTCATGCTTTACGCTACAATCTGGCTGC 10356554 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | || |||||| | || || ||| ||||||| ||||||||| ||| ||||||||| Sbjct 10356553 GTGAACACAACCGTGTGTGTGACCTGCTGAAGGCTGAGCACCCGACCTGGGACGACGAAC 10356494 Query 214212 AGCTGTTCCAGATCACTCG 214230 |||| ||||||| ||| || Sbjct 10356493 AGCTCTTCCAGACCACCCG 10356475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723246575819040