Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq14 93.3 3e-14 >seq14 Length=40210847 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || || || | ||||||||||||||||| || || || || ||| Sbjct 6356472 GGAGAACGGGTTGTAGCCTTCGCTGCGGTGGAAGGCATTTTCTTCTCCGGCTCCTTCGCG 6356531 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||| || ||| | ||||| ||||| ||||||||||| | || || || ||||| | Sbjct 6356532 TCCATCTTCTGGCTCAAGAAGCGAGGCCTGATGCCTGGGCTCACTTTCTCCAATGAACTC 6356591 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 6356592 ATTAGCAGGGATGA 6356605 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| || ||| ||||| || || || || || || |||||||| Sbjct 6354141 CGGTTTAGCCAAGAAGTTCAGATCACC-GAAGCCCGCTGCTTCTACGGCTTCCAAATTGC 6354199 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| ||||| || ||||| ||||||||||| || || || || || ||||| || || Sbjct 6354200 CATGGAAAACATACATTCAGAAATGTACAGCCTGCTTATCGACACTTACATTAAGGA 6354256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397405520728105