Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq42 107 2e-18 seq40 93.3 4e-14 >seq42 Length=18384968 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||| || | ||| || ||||| || || ||||||||| Sbjct 13800127 TGCCACCCCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGG 13800068 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | || || ||||| || | ||| | ||||||||||| || ||||| | Sbjct 13800067 ACAGAGTGCGACCATCCTCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGG 13800008 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| | || | | |||| | ||||| ||| || | Sbjct 13800007 GGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCA 13799948 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||||||||| || || || ||||| ||||| Sbjct 13799947 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq40 Length=19049039 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/136 (76%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT- 131088 |||||||| ||||||||||||||||| |||||||| ||||| ||| || ||||| Sbjct 15947526 GCCAGGTCACAACTAGCTTCCAAAGCTCCATAATAAATAGTTTCAAAAATCTGCTTATTC 15947467 Query 131089 --TAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCG 131146 ||| ||| | || | ||||| ||||| || |||| | ||||||||| ||||| Sbjct 15947466 AGTAACTGTGCCTCTGG---ACTCTCAAAAGGATATCTCATCAGAATAAAAGCATCTGCC 15947410 Query 131147 AGACCCTGTATCCCAA 131162 ||||| |||| ||||| Sbjct 15947409 AGACCTTGTACCCCAA 15947394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424880430808152