Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq40 87.8 2e-12 >seq40 Length=19049039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || || |||| |||||||| || | |||| | ||| || || || Sbjct 15941924 CTCATCTTTGCTGGTATATTCTACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCC 15941865 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 | |||| ||||| ||||| ||| || | ||| ||||||||||||||||| || || Sbjct 15941864 AAGGTTCTGCTGGTTGCTCTTGCGGTTACAAGAATCTTTGTAGAGCATGTAGGGGGTGCC 15941805 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||||||||| || | || ||||| | ||| Sbjct 15941804 TGTCTCCGTCTGAGACTCGATGATAGCGTACCA 15941772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627950190981600