Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 221 4e-52 seq129 197 4e-45 seq65 190 6e-43 seq67 188 2e-42 seq6 181 3e-40 seq21 168 2e-36 seq13 129 2e-24 seq1 127 6e-24 seq20 116 1e-20 seq12 113 1e-19 seq49 109 2e-18 seq7 95.1 4e-14 seq63 86.0 2e-11 seq48 84.2 7e-11 seq17 84.2 7e-11 >seq3 Length=63406555 Score = 221 bits (244), Expect = 4e-52 Identities = 704/1085 (65%), Gaps = 15/1085 (1%) Strand=Plus/Plus Query 349549 AATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGA 349608 ||||||| | ||||||||||| || || ||||| || | || | || | || | Sbjct 58826401 AATGGTTCTGTCCAAAATGAAGGAGATCGCAGAAGCCTACCTTGGCAAGACTCTTACCAA 58826460 Query 349609 TGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGC 349668 ||||| | || || | |||| || ||||| | |||||| || || ||||| || Sbjct 58826461 CGCTGTGGTCACAGTGTCCACCTACTTCAATGACTCTCAGCGTCAGGCCACCAAAGACGC 58826520 Query 349669 TGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAAT 349728 ||| | |||||| || |||||||||| | || || ||||| || |||||||| || || Sbjct 58826521 TGGAACCATTGCTGGTCTAAATGTTCTTTGGATCATCAATGAGCCAACTGCTGCTGCTAT 58826580 Query 349729 TGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGG 349788 ||| ||||| || || || | | ||| ||||||||| | | |||||||| | || Sbjct 58826581 TGCTTATGGCCTGGACAAGAAGGTTGAGGCTGAAAAAAATGTGGTGATTTTTGACCTGGG 58826640 Query 349789 TGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGC 349848 ||||| || || ||||| || | || ||| ||||||| |||| ||||| || || | Sbjct 58826641 AGGTGGCACGTTCGATGTGTCTATCCTCACAGTTGAAGATGGAACCTTTGAGGTCAAGTC 58826700 Query 349849 AACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTT 349908 | ||||| || || ||| | ||||||||||| ||||| || || || ||||| Sbjct 58826701 CGCAGCTGGAGACACCCATTTAGGTGGAGAAGACTTTGACAACCGCAAGGTCAACCATTT 58826760 Query 349909 TGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGC 349967 || ||| || || | ||||| ||| | || || | || || ||||| | Sbjct 58826761 CATTGCAGAGTTCAAATG-CAAGCATAAGAAGGACATCAGTGAGAACAAGAGAGCTGTCA 58826819 Query 349968 GTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCT 350027 | |||| | ||||| ||||| || |||||||| || | || || | ||||| | Sbjct 58826820 GGTGCCTGTGCACTGCTTGTGAGCGGGCTAAGCGCACCCTCTCTTCCAGCACCCAGGCGA 58826879 Query 350028 CTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTC 350087 ||||| || |||| | | ||| || | || |||| | || ||||| || ||| Sbjct 58826880 GCATTGAGATAGATTATTTGTATGAAGGAATTGACTTCTGCACCTCCATTACCCGGGCTT 58826939 Query 350088 GGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 | ||||| || || |||||||| | | || |||| ||||| | || | Sbjct 58826940 GATTTGAGGAGTT-------GATCTTTTCCGTGGCACCATGGGCCCTGTTAAGAAGGCTG 58826992 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| || | ||| || |||| | || |||| |||||||| | Sbjct 58826993 TTCTGGATGCCAAGTTAGACAAGTCGTGGACCCATGACATTGTCCTAGTGGGTGGTTCCA 58827052 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT- 350266 | | ||||| || | || || || || | || | ||| ||||| | | Sbjct 58827053 CCAGAATTCCCAAGATCCAGAAGCCGCTTCAGGACTCCTTCAGTGGGAAAGAGCTGAATA 58827112 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTA 350326 ||| | || ||||| ||||| |||| || ||||||| ||||| |||||| | || | Sbjct 58827113 AGAGC-ATCAATCCTGATGAGACTGTGGCTTATGGTGTAGCTGTGCAGGCAGCCATCCTG 58827171 Query 350327 TCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCG 350386 |||||| | ||| | || || | ||||| || || | ||||| ||||| | || Sbjct 58827172 TCTGGAGACAAGTCTGAGAACGTTCAGGATCTGTTGCTGTTGGATGTCACTCCTTTCTCC 58827231 Query 350387 CTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAG--AAATAGTACTG 350444 ||||| | || ||| ||| || ||| ||||| | || || | || || | || Sbjct 58827232 CTTGGCATTGAGACTGCTGATGGAGTCATGACCATGCTCAT--CAAGCACAACACCACAA 58827289 Query 350445 TACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAA 350504 | || || || || || || | || | |||| || ||||| | || | Sbjct 58827290 TTCCCACCAAGCAGATGTTGACCTTCACCACCTACTCAGACAACCAGCCTGGTGTGCTCA 58827349 Query 350505 TTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTA 350564 |||| || | ||||||||| | |||| || || ||||| ||| ||||| | ||| Sbjct 58827350 TTCAGGTTTATGAAGGTGAGCATGCTATGACCAAGGATAACAATCTGCTTGGCAAGTTTG 58827409 Query 350565 CCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATA 350624 || | || ||||| ||| | || |||||||||||||||||| | || |||| Sbjct 58827410 AACTCACCACCATACCACCTATGACCCATGGCGTTCCTCAGATTGAAGTCACCTTTGATA 58827469 Query 350625 TTGAT 350629 ||||| Sbjct 58827470 TTGAT 58827474 >seq129 Length=2073869 Score = 197 bits (218), Expect = 4e-45 Identities = 693/1071 (65%), Gaps = 11/1071 (1%) Strand=Plus/Plus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || || || || || ||| | || ||||| ||||| || || || Sbjct 758701 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCCAGCTACGTGGCCTTCACG 758760 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| |||| || || | || || || || | || ||||| | || Sbjct 758761 GACACGGAGCGTCTGATCGGCGACGCGGCCAAGAACCAGGTGGCCATGAATCCCCAGAAC 758820 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || |||||||| || || || || || |||| ||| ||| | ||||| Sbjct 758821 ACTGTCTTTGATGCCAAACGTCTAATCGGCAGAAAGTTTAATGATCCTGTTGTGCAATCA 758880 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | |||| || ||||| || | || || || || | || || | | | Sbjct 758881 GACATGAAACTTTGGCCTTTCCAAGT-GATC--AATGAAGGGGGCAAGCCCAAGGTGCTG 758937 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAA-ATTTCATCAATGGTTTT 349557 ||| |||||||| || |||||| ||| |||||| || | || || || ||||| | Sbjct 758938 GTTTCTTATAAAGGGGAGCAAAAAGC-TTTCTACCCGGAGGAGATCTCGTCCATGGTGCT 758996 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || |||||||| | ||||| || | ||| || | |||| || | ||||| || Sbjct 758997 CACCAAGATGAAGGAGACCGCTGAGGCTTTTTTGGGCTACCCAGTGACCAACGCTGTGAT 759056 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || ||||||||||| || || | ||||| || ||||| ||||| || || Sbjct 759057 CACAGTGCCAGCCTATTTCAACGACTCGCAGCGCCAGGCCACAAAGGATGCAGGTGTGAT 759116 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | ||||| || ||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 759117 TGCAGGACTCAATGTGCTTAGAATCATCAATGAACCCACAGCTGCTGCCATTGCGTATGG 759176 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 | |||||| || | ||| | || | || || |||||||| ||||| || || Sbjct 759177 TTTAGATAAAGCTGGTCAGGGAGAGCGACATGTCCTGATCTTTGATTTGGGTGGAGGAAC 759236 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 |||||||| || | || || | || || || || || || || || || || || || Sbjct 759237 CTTTGATGTGTCCATCCTGACCATCGACGACGGCATCTTCGAGGTGAAGGCCACGGCGGG 759296 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 || || || || || || || || || || || || || || || || || | || Sbjct 759297 CGACACGCACCTGGGCGGCGAGGACTTCGACAACCGGCTGGTGAGCCACTTCGTGGAGGA 759356 Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 || ||| | |||| || | || || | | || | || |||| || || Sbjct 759357 GTTCAAGAG-GAAGCACAAGAAGGACATCAGCCAGAACAAGCGCGCCGTGCGGCGGCTGC 759415 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || ||||| || || || ||||| | | || || | || || || | || | Sbjct 759416 GCACGGCGTGCGAGCGGGCCAAGCGCACGCTGTCGTCCAGCACGCAGGCCAACCTGGAGA 759475 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | ||||| ||| ||| |||| || |||| | || || || | || || ||||||| Sbjct 759476 TCGATTCACTTTATGAGGGCATCGACTTCTACACGTCCATCACCAGAGCCCGATTTGAAG 759535 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | | ||| || | ||||| | || |||| ||||| ||||||| | |||| Sbjct 759536 AGCTGTGTGCAGACTTGTTTAGGGGTACCTTGGAACCTGTTGAAAAAGCTCTTCGGGATG 759595 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | || ||| ||| | | || | || | ||||| || || || || || || || | Sbjct 759596 CCAAGATGGATAAAGCTAAAATCCACGACATTGTTTTGGTAGGGGGCTCCACGCGCATCC 759655 Query 350217 CAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT--CTAGATCAAT 350274 | || || || ||| || || | || || ||| | ||||| | | | | || Sbjct 759656 CCAAGGTGCAGAGGTTGCTTCAGGACTACTTCAACGGCCGTG-ACCTTAACAAAAGC-AT 759713 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 || || |||||||| || |||||||| ||||| || |||||| | ||||| Sbjct 759714 CAACCCTGATGAAGCAGTAGCATATGGGGCTGCCGTGCAGGCAGCCATTTT 759764 >seq65 Length=10584338 Score = 190 bits (210), Expect = 6e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | ||| || || ||||| ||||||||||| || ||||| || || || || Sbjct 10481007 ACCACCACGGAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 10480948 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 ||| ||||| |||| ||| || || || ||||||||||| || | ||||||||| |||| Sbjct 10480947 TAAAGTTCGGCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGG 10480888 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| |||||||| | ||| |||||||| || || |||| ||| || || ||||| Sbjct 10480887 AATTCCTTCCTTATCCTGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAAC 10480828 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || ||||| | |||||| Sbjct 10480827 CTCGAGGGTGATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCAT 10480780 >seq67 Length=9509266 Score = 188 bits (208), Expect = 2e-42 Identities = 179/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||||| | ||| || || || || ||||| |||| || ||||| || |||||||| Sbjct 6398381 ACCACCAC--AGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGA 6398324 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 ||| |||| |||||||| || || || ||||||||||| || | ||||||||| ||||| Sbjct 6398323 TAAACTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGG 6398264 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| |||||||| ||||| |||| |||||| || || | ||| || || ||||| Sbjct 6398263 AATTCCTTCCTTATCCTGGATTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAAC 6398204 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || ||||| |||||||| Sbjct 6398203 CTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq6 Length=51880498 Score = 181 bits (200), Expect = 3e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | ||| || || || || ||||| ||||| || ||||| || || ||||| Sbjct 32416408 ACCACCACGGAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 32416349 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | | ||| | |||||||| || || || ||||||||||| | | ||||||||| ||||| Sbjct 32416348 TGAAGTTTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGG 32416289 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| |||||||| |||| ||||||||||| || |||| ||| || || || | Sbjct 32416288 AATTCCTTCCTTATCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTC 32416229 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || ||||| || |||||||| Sbjct 32416228 CTCTAGGGTGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 >seq21 Length=30942271 Score = 168 bits (186), Expect = 2e-36 Identities = 371/549 (68%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | || |||||||| | || ||||| ||||| ||||| || | || ||| Sbjct 873284 GAAAGGAATGTGCTGATTTTTGACCTGGGAGGTGGCACTTTCGATGTGTCTATCCTCACA 873343 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| ||||| ||||| || || | || ||||| || || ||||| ||||||||| Sbjct 873344 ATTGAAGATGGAATCTTTGAGGTCAAGTCCACAGCTGGAGACACCCATCTGGGTGGAGAA 873403 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938 || ||||| || || | || ||||| || ||| || ||||| ||||| ||| | Sbjct 873404 GACTTTGACAACCGCATGGTCAACCATTTCATTGCAGAGTTCAAGCG-CAAGCATAAGAA 873462 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || || | || || |||||| | | ||||| | ||||| ||||| || ||||| Sbjct 873463 GGACATCAGTGAGAACAAGAGAGCAGTCAGGCGCCTGCGCACTGCTTGTGAGCGGGCTAA 873522 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 ||| || | || || | ||||| | ||||| || |||||||| ||| || | Sbjct 873523 GCGCACCCTGTCTTCCAGCACCCAGGCGAGCATTGAGATAGATTCTCTGTATGAAGGAAT 873582 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTT 350116 || |||| | || ||||| || ||||| |||||||| | || ||| || ||||| Sbjct 873583 CGACTTCTACACCTCCATTACCCGGGCTCGATTTGAAGAGT--TGAATGCTGACCTTTTC 873640 Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176 | | || |||| ||||| || || | | |||||| || | ||| ||| Sbjct 873641 CGTGGCACCCTGGACCCTGTCGAGAAGGCCCTTCGAGATGCCAAGTTAGACAAGTCGCAG 873700 Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || |||| |||| | || || |||||||| | ||||| || | || | | || Sbjct 873701 ATCCATGACATAGTCCTGGTGGGCGGTTCTACCAGAATTCCCAAGATCCAGAAACTGCTC 873760 Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295 || || || ||||| ||||| | | ||| | || || || ||||| ||||| || Sbjct 873761 CAGGATTTCTTCAATGGGAAAGAGCTGAACAAGAGC-ATCAACCCCGATGAGGCTGTGGC 873819 Query 350296 ATATGGTGC 350304 |||||||| Sbjct 873820 CTATGGTGC 873828 >seq13 Length=39823089 Score = 129 bits (142), Expect = 2e-24 Identities = 157/211 (74%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGAC--TCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 |||||||| |||| ||| || | |||| || || |||||||| || | |||||| Sbjct 7253869 ACAAGATGCTGAGTGGACATTCCTGCTGAAAGTTGTAGTCAGATAAAATTTGTTCATCTT 7253928 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 || |||| || |||| ||||| || | |||||||||||||||||||||||| ||||||| Sbjct 7253929 CAGGTTGCTTGCCAGTGAAGATCAGTCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 7253988 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | |||| |||| ||||| ||| | | ||| || ||| | ||||| || |||| Sbjct 7253989 GGGTTTTGACTTTCACATTTTCAGT--ATGCAG-GGGCTCAGCATCAAGGGTGCTGGTCT 7254045 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| || || ||||| ||||||| Sbjct 7254046 TCCCTGTTAGAGTCTTGACAAAGGTCTGCAT 7254076 >seq1 Length=83735184 Score = 127 bits (140), Expect = 6e-24 Identities = 228/332 (69%), Gaps = 1/332 (0%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||||||| |||| ||||| || | || | || || || | ||||| | || Sbjct 30245865 AAAATGAAGGAGATTGAAGAAGCCTACCTTGGCAAGACTGTTACCAACGCTGTGGTCACA 30245806 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || | | |||||| | | ||||| |||| | |||||| Sbjct 30245805 GTGCCTGCCTACTTAAACAACTCTCAGCGTCAGACCGCCAAAGACGCTGCAACCATTGCT 30245746 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | |||||||| | || || || || || |||||||| || ||||| ||||| || Sbjct 30245745 GGTCTCAATGTTCTTCGGATCATCAACGAGCCAACTGCTGCTGCTATTGCTTATGGTCTG 30245686 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 | | | | || |||| |||| | || |||||||| | || ||||| |||||| Sbjct 30245685 CACAGGAAGTTTGGGGCTGAAAGAAATGTGCTGATTTTTGACCTTGGAGGTGGCACTTTT 30245626 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 || || || | || ||| ||||| ||||| ||||| || || | ||||| || Sbjct 30245625 GACGTGTCTATCCTCACAATTGAATCTGGAATCTTTGAGGTCAAGTACATAGCTGGAGAC 30245566 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCG 349893 || ||| | ||||||||||| ||||| || || Sbjct 30245565 AC-CATTTAGGTGGAGAAGACTTTGACAACCG 30245535 Score = 86.0 bits (94), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 ||||| || ||||| | || |||| || | |||||||||||||||| |||||| | Sbjct 40736165 CCATCCTCCAGTTGCTGGCCG---AAGACCAGTCTTTGCTGATCAGGAGGACTTCCTTTT 40736109 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 | ||||||| || | | | |||||||||| | | ||| || | ||||||| ||||| Sbjct 40736108 TCATCCTGACTTCGA-CATCTACATTATCAGTTGTATCGGAGGAGTCAACTTTGAGTGTG 40736050 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||| | |||| ||||||||||| | ||| || Sbjct 40736049 ATGTTCTTCCTCATTAGGGTTTTTACAAAGAGCTGTAT 40736012 >seq20 Length=31296900 Score = 116 bits (128), Expect = 1e-20 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||| | | ||| | ||||||||||||| ||||| ||||||||||| | || | Sbjct 13022981 CCACCATGAAGTCTCAACACAAGATGAAGAGAGGACTCCTTTTGAATATTGGAGTCTTAC 13023040 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || | |||| ||| ||||| || ||| || |||||| | || ||||| || |||| Sbjct 13023041 AAAGTCCATCCATATTCCAGTTGCTTGCCACTAATGATTAGTCTTTACTGATAAGCAGGA 13023100 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 |||| ||| ||| |||| ||||| || |||||||| | | | ||| | |||| | Sbjct 13023101 ATTCTTTCCTTAGCCTGGATTTTGGCCTTTACATTTCCTGTTGTATCCAAGAATTCAGCC 13023160 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734 ||||| | | ||||| | | || ||||||| || ||||| Sbjct 13023161 TCAAGCATGATGGTCTTCTCCATCAGAATTTTTACCAAGATCTG 13023204 >seq12 Length=43805204 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 140512 CACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATA 140571 ||||| | | ||| | ||||||| | ||| ||||| |||||||| | ||||||||| Sbjct 34807094 CACCATGAAGTCTCAACACAAGATATAAAGTGGACTCCTTTTGAATGTGGTAATCAGATT 34807153 Query 140572 ATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAA 140631 | ||| | |||||||| ||||| || || | |||||| | ||| ||||||||||||| Sbjct 34807154 AAGTTTGTCCATCTTCCAGTTGCTTGCCGGTAAAGATCAATATTTGTTGATCAGGAGGAA 34807213 Query 140632 TTCCTTCTTTATCCTGAATTTT 140653 ||||||| |||| ||| ||||| Sbjct 34807214 TTCCTTCCTTATTCTGGATTTT 34807235 >seq49 Length=14824766 Score = 109 bits (120), Expect = 2e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 || || || ||||| || || || || || ||||| | || || || ||||| || || Sbjct 11086298 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGC 11086239 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||| || | ||||| || ||||| || |||||||||||||| || || Sbjct 11086238 TTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 11086179 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| || || | || ||||| || || || || | ||||| || || Sbjct 11086178 GCCTTGACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTC 11086119 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 11086118 AGGGTCTTCACGAAGATCTGCAT 11086096 >seq7 Length=48563517 Score = 95.1 bits (104), Expect = 4e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || |||||||| ||||| |||||||| || || || ||||||||||| Sbjct 43600854 TTCTGAATGTTGTAGTCAGATAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 43600913 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCT 140636 || | ||||||||| |||||||||||| Sbjct 43600914 AGTCTTTGCTGATCCGGAGGAATTCCT 43600940 >seq63 Length=10623516 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 ||||||||| | || | |||||||||||||| || |||||||| |||| ||| | | Sbjct 8045461 ATTGATGAAATTGTGCTCGTTGGTGGTTCTACTCGAATTCCAAAGATTCAGCAGCTGGTT 8045520 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || |||||||| || || || | || || || ||||| || || || Sbjct 8045521 AAAGAGTTCTTCAATGGCAAGGAGCCATCGCGTGGCATCAACCCTGATGAGGCCGTGGCG 8045580 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 || ||||||||||| ||||| Sbjct 8045581 TACGGTGCTGCTGTGCAGGC 8045600 >seq48 Length=14010701 Score = 84.2 bits (92), Expect = 7e-11 Identities = 146/210 (70%), Gaps = 7/210 (3%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 ||||||||||| | ||||| ||| |||| | || ||||| | | | ||||| || | Sbjct 4396040 CAAGATGAAGAATGGACTCCTTTAGAATCCTGTAGTCAGAGAGTCTAT--CCATCCTCCA 4395983 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 |||| || |||||||| | | || || ||| ||||||| | || | |||||| | Sbjct 4395982 GTTGCTTGGCAGCAAAGGTCAATGTTTACTTCCCAGAAGGAATTGCCTCCTCATCCTGGA 4395923 Query 140650 TTTTAGCTTTTACATTATCAATCG--AATCAG---ATGGTTCAACTTCAAGTGTAACTGT 140704 |||||||||| ||||| || | | | | || | ||| | || | ||||| || || Sbjct 4395922 TTTTAGCTTTCACATTTTCTGTTGTCACTTAGGGTAGGGTCCCACCTTGAGTGTGACGGT 4395863 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734 ||| || | | ||||||||||| |||| Sbjct 4395862 CTTCCCCATGAAGGTTTTTACAAAGTTCTG 4395833 >seq17 Length=35549867 Score = 84.2 bits (92), Expect = 7e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 140531 AAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAG 140590 ||||| || ||| ||||| |||||| ||||| ||||||||||| | | |||| | | Sbjct 33407562 AAGATAAACAGTGGACTCCACTTGAATGTTATAGTCAGATAATGTACTTCTATCTCCCA- 33407620 Query 140591 TTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAAT 140650 || | ||||||||| || | ||| ||||| ||||||||||| | |||||||| | Sbjct 33407621 TTACCTGACAGCAAAGAACAGCCTTTGGTGATCCGGAGGAATTCCATTCTTATCCTGGAC 33407680 Query 140651 TTTAGCTTTTACATTATCAAT 140671 || || |||| ||| || || Sbjct 33407681 CTTGGCCTTTATATTTTCCAT 33407701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515052084653063