Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 2e-13 >seq14 Length=40210847 Score = 91.5 bits (100), Expect = 2e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 59989 TAGCTTTTGCATGCG-TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 |||| || || |||| ||||||| || |||||||| ||||| ||| | || |||||| Sbjct 6356485 TAGCCTTCGC-TGCGGTGGAAGGCATTTTCTTCTCCGGCTCCTTCGCGTCCATCTTCTGG 6356543 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 ||||| ||||| ||||| ||||| || || | ||||||||| || || ||| | |||| Sbjct 6356544 CTCAAGAAGCGAGGCCTGATGCCTGGGCTCACTTTCTCCAATGAACTCATTAGCAGGGAT 6356603 Query 60108 GAGG 60111 |||| Sbjct 6356604 GAGG 6356607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548453347788240