Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq40 145 9e-30 seq42 143 3e-29 seq6 140 4e-28 seq67 138 1e-27 seq65 134 2e-26 seq30 102 9e-17 seq3 96.9 4e-15 seq13 93.3 5e-14 seq4 91.5 2e-13 seq33 86.0 7e-12 seq58 82.4 9e-11 >seq40 Length=19049039 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 ||||||||||| || ||||||||||| || || || ||||| ||| | | || | ||| Sbjct 15841128 TTTGTCAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATC 15841187 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||||| || || ||||| ||||| || || ||||| ||||||||| | || Sbjct 15841188 GAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGCAGAGGCTG 15841247 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || ||||| || ||||| || || || | || ||||| | ||||| || |||| ||| Sbjct 15841248 ATCTTTGCAGGCAAGCAGCTGGAAGACAACCGCACCCTGTCTGACTACAACATCCAGAAG 15841307 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || || ||| | |||||| | ||||| Sbjct 15841308 GAGTCCACCCTGCACCTGGTCCTCCGTCTTAGGGGTGG 15841345 >seq42 Length=18384968 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | | Sbjct 13799899 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 13799958 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| || || || |||||| Sbjct 13799959 GACACCATCGAAAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 13800018 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| | ||||| || ||||||| ||| || || | ||||| || Sbjct 13800019 CAGCGTCTCATCTTTGCCAGCAAGCAGCTGGAGGATGGTCGCACTCTGTCCGACTACAAC 13800078 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || || | || || || ||||| Sbjct 13800079 ATCCAGAAAGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGGGGTGG 13800125 >seq6 Length=51880498 Score = 140 bits (154), Expect = 4e-28 Identities = 168/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| || | | Sbjct 47505060 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCCAGC 47505119 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||| ||||| || || ||||| |||||| Sbjct 47505120 GACACCATCGAGAATGTCAAGGCCAAGATCCAGG-TAAGGAAGGCATCCCTCCTGACCAG 47505178 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 47505179 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 47505238 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | |||||| | ||||| Sbjct 47505239 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTTAGGGGTGG 47505285 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| |||||||| || || || |||| ||| | Sbjct 32416181 ATGCAGATCTTCGTAAAGACCCTTACGGGCAAGACCATCACCCTAGAGGAAGAGCCCTCG 32416240 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || |||| ||||| ||||| ||||||||||| || ||| Sbjct 32416241 GATACGATAGAAAATGTAAAAGCCAAAACCCAGGATAAGGAAGGAATTCCTCCGGATCAG 32416300 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || |||||||| ||||| || || |||| | || | | ||||| || Sbjct 32416301 CAAAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCAAACTTCATCTGACTACAAC 32416360 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||||| || || || || | || || ||||| Sbjct 32416361 ATTCAGAAGGAGTCCACTCTGCACCTGGTGCTGAGACTCCGTGGTGG 32416407 >seq67 Length=9509266 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| ||||| |||||||| || || || ||||||||| | Sbjct 6398156 ATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCG 6398215 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | | || ||||| ||||| ||||| |||||||||||||| ||| Sbjct 6398216 GATACAATAGAAAATGTATAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 6398275 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| ||||| || || |||| || | || | || || || Sbjct 6398276 CAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGATTACAAC 6398335 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || ||||| | |||||| || || || Sbjct 6398336 ATTCAGAAGGAGTGCACTCTGCACCTGGT 6398364 >seq65 Length=10584338 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||| ||||| |||||||| || || || ||||||||| | Sbjct 10480780 ATGCAGGTCTTTGTCAAGACCCTTACAGGCAAGACCATCACCCTCGAGGTTGAGCCCTCG 10480839 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || ||| | ||||| ||||| |||||||||| || ||| Sbjct 10480840 GATACGATAGAAAACGTAAAAGCCAAAGTCCAGGATAAGGAAGGAATTCCTCTGGATCAG 10480899 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| ||||| || || ||| || || || | ||||| || Sbjct 10480900 CAAAGACTGATCTTTGCTGGCAAGCAGCTGGAATATGGCCGAACTTTATCGGACTACAAC 10480959 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| ||||| || || | || || ||||| Sbjct 10480960 ATTCAGAAGGAGTCTACTCTGCATCTGGTGCTGAGACTCCGTGGTGG 10481006 >seq30 Length=25365230 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| | ||||| || || ||||| || ||||| |||||||| ||| | | Sbjct 16538574 AATGCAGATCTTCATGAAGACCCTGACAGGCAACACCATTACGCTTGAGGTGGAGCCCAG 16538515 Query 27465 TGATAGCATTGCAAA----TTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 || | | | ||| ||| ||||| || || |||||| | ||||| || || || | Sbjct 16538514 CGACACCTTCAAAAACGTTTTTCAAGGCGAAGATCCAGGACGAAGAGGGCATCCCCCCGG 16538455 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 ||||||||||||| || ||||| | ||||| | |||||||| || || Sbjct 16538454 ACCAGCAGCGTCTGATCTTTGCCGACAAGCAGTTGGAGGATGACCGCAC 16538406 >seq3 Length=63406555 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||||||||| | || | ||||| || | | Sbjct 63015809 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCACCACCCCGGAGGTCAAGCCCAGC 63015750 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||| ||||| || || ||||| |||||| Sbjct 63015749 GACACCATAGAGAATGTCAAGGCGAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 63015690 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || | ||| || | || | |||||||| | | ||| || Sbjct 63015689 CAGAGGTTGATCTTTGCAGGCAGGCAGCTGGGAGACAACCGTACCCTGTCTGTCTACAAC 63015630 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| || || ||||| || || Sbjct 63015629 ATCCAGAAAGAGTCCACCCTGCA 63015607 >seq13 Length=39823089 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| | |||||||||||| || || || ||||| | || ||||| | |||| | Sbjct 7254076 ATGCAGACCTTTGTCAAGACTCTAACAGGGAAGACCAGCACCCTTGATGCTGAGCCCCTG 7254017 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| || |||| |||| | |||| ||||| ||||| ||||||||||| || ||| Sbjct 7254016 CATAC---TGAAAATGTGAAAGTCAAAACCCAGGATAAGGAAGGAATTCCTCCTGATCAG 7253960 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || || |||| ||||||| || ||||| | | || | ||||| || Sbjct 7253959 CAAGGACTGATCTTCACTGGCAAGCAACCTGAAGATGAACAAATTTTATCTGACTACAAC 7253900 Query 27586 GTCCAAAAGGAA--TCCACTCTTCATCTAGT 27614 | || ||||| ||||||| ||||| || Sbjct 7253899 TTTCAGCAGGAATGTCCACTCAGCATCTTGT 7253869 >seq4 Length=59374630 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | | |||||||||||| ||||| |||||||| || | || |||||||| | Sbjct 23529264 ATGTAGAACTTTGTCAAGACCCTTACAGGCAAGACCATCATCCTCAAGGTTGAGCCTTCA 23529205 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| || | |||| ||| | ||||| || || ||||| ||| ||||||| | ||| Sbjct 23529204 AATATGATAGAAAATGGGAAAACCAAAATCCAAGATAAGGAAGGAGTTCCTCCTAATCAG 23529145 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || ||| ||||| || || |||| | || || | ||||| || Sbjct 23529144 CACAGATTGATCGCTGTTGGCAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 23529085 Query 27586 GTCCAAAAGGAATCCACTCTTCATC 27610 | |||| ||| |||||||| |||| Sbjct 23529084 ATTCAAACGGAGTCCACTCTACATC 23529060 >seq33 Length=21485095 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| || | |||||||||||||| || || ||| | ||||| || |||| Sbjct 8956897 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAACAACATTAACTTGCTTCAGCCT 8956956 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| ||||||||||| ||||| |||||||| |||||||| ||| | ||||| || Sbjct 8956957 ATTGGCCAGTTTGGGACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 8957016 Query 32245 TTCAC 32249 ||||| Sbjct 8957017 TTCAC 8957021 >seq58 Length=12492363 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || | || ||||| ||| | | Sbjct 9398026 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCCCCCTGGAGGTCGAGCCCAGC 9397967 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 | | ||| | ||| | ||||| || || ||||| ||||| || || ||||| |||||| Sbjct 9397966 AACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAG 9397907 Query 27526 CAG 27528 ||| Sbjct 9397906 CAG 9397904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570236109941520