Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq50 233 3e-56 seq139 156 6e-33 seq3 89.7 7e-13 >seq50 Length=14117412 Score = 233 bits (258), Expect = 3e-56 Identities = 621/936 (66%), Gaps = 27/936 (3%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 ||| || ||| || |||| |||||||||||||| || || |||| | || ||||| Sbjct 4068200 GCCGCTTAGCAAAGAGGAGGCAGAGTTTCCCATCGCTTATTCCGTCGTCGTTCATCACAA 4068259 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 ||||| ||| | || | |||||||||||||||||| || |||||| |||||||| | Sbjct 4068260 AATCGAAATGCTGGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAACTTCTACTGCAT 4068319 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGG--GC-GTCTCGGCCATCGCCAG 13846 ||||| ||| ||||| || || | | || || || ||| || | |||| Sbjct 4068320 TCACGTCGACAGGAAGTC---AGAGGAATCCTTCTTGGCTGCGGTCAGGGGCCTCGCGTC 4068376 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAG 13906 || ||| | ||||| | ||||| | |||| | ||||||||| | ||| ||||| Sbjct 4068377 CTGTTTCACGAACGTCTTCGTGGCCAGTCAGCTGGAGACCGTGGTGTATGCCTCATGGAG 4068436 Query 13907 TCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAG 13966 |||||| ||||| ||||||| ||||||| |||||| | | | | | |||| Sbjct 4068437 TCGCGTCCAGGCAGACCTCAACTGCATGAAGGACCTCTATGGCCTGAGTGCGGACTGGAA 4068496 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 |||| || ||||||| ||||||||||| ||||| |||| |||||||||||||| || | Sbjct 4068497 GTACTTGATCAACCTTTGCGGGATGGATTTCCCTATCAAAACCAACCTGGAGATAGTCAG 4068556 Query 14027 GGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA 14086 ||| ||| | | ||| ||||| |||||| | ||| | ||||| | | || Sbjct 4068557 AAAGCTCAAGTCGTTAATGGGCGAGAACAACCTGGAAACGGAGAGGATGCCGCCCAATAA 4068616 Query 14087 GCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGG 14146 | | | || ||| |||| | | | ||| | | | | ||||| || Sbjct 4068617 GGAAGAAAGGTGGAGAAAGCATCACGCCATTGTGAACGGGAG---GCTTATAAACACGGG 4068673 Query 14147 CAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGC 14206 || | ||||| | ||| || ||| ||||| |||| |||| | || ||||||| Sbjct 4068674 CACGGTCAAGGAGCAGCCTCCCCTCCCCATCCCTCTCTTCTCGGGCAGTGCCTACTTTGT 4068733 Query 14207 GGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCA 14266 ||||| |||||| |||| | ||| || || | || || | | ||| | Sbjct 4068734 GGTCAGGAGGGAGTATGTGGGTTACGTGCTGGAGAATGAAAACATGCAGAAGTTTATGGA 4068793 Query 14267 CTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTA 14326 ||| ||||||| |||||||| |||||| | || ||||||||| | || || || Sbjct 4068794 GTGGGCGCAGGACACCTACAGCCCGGACGAGTATCTCTGGGCCACCATCCAAAGGATCCC 4068853 Query 14327 CGGGACGCCCGG--GGGGATCCCCGTTCACGTC--AAGTACGACACCTCGGACATGTGGG 14382 | ||| || | || |||| | ||| ||||||||| || |||||| || Sbjct 4068854 AGAAGTGCCAGGCTCTGTAT---CGTT-AAGTCAGAAGTACGACTTGTCTGACATGCAGG 4068909 Query 14383 CCAAGGTC---AGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCC 14439 | |||| ||||| ||||||||||| |||| || || || | || || || | Sbjct 4068910 C---GGTCGCGAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAGGGCGCGC 4068966 Query 14440 TGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACG 14499 ||||| || ||| |||| ||||||| | | | | ||| | |||||| | |||||| Sbjct 4068967 CCTACCCACCCTGCCACGGTGTCCACGTGCGCTCTGTGTGCGTGTTCGGGGCTGGCGACT 4069026 Query 14500 TGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACG--GA 14557 |||| ||| || | | | ||| |||| ||||||||||| ||| ||| || | || Sbjct 4069027 TGAATTGGATGCTGCGGAAACACCACTTGTTTGCCAACAAGTTTGAC-ACG-GATGTTGA 4069084 Query 14558 CGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593 | || ||| | | || ||||| ||| || |||| Sbjct 4069085 CCTCTTTGCCATCCAGTGCCTGGATGAGCACCTGCG 4069120 >seq139 Length=1774119 Score = 156 bits (172), Expect = 6e-33 Identities = 275/397 (69%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 |||| || ||||||||||| || || || |||||| | || ||||| ||||||||| | Sbjct 480345 GAAGGGGCAGAGTTTCCCATTGCTTATTCTATCGTGGTTCATCACAAAATCGAGATGCTG 480404 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || |||| |||||||| |||| || ||||||||||| ||| | || ||| Sbjct 480405 GACAAGCTCCCGAGGGCCAGCTACATGCCTCAGAACCTCTATTGCATTGGTGTAGACAGG 480464 Query 13803 AAGTCCGGCGACGAGTTCATCCGG--GGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 |||| ||| | | | || ||| | | ||| || | |||| || ||| | |||| Sbjct 480465 AAGT-CGGAGGC-ATCTCTTCCAGCTGCGGTCAGGGGCCTCGCGCCCTGTTTCACGAACG 480522 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | | ||||| | |||| | ||||||||| | ||| ||||||||||| ||||||| Sbjct 480523 TCTTCGTGGCCAGTCAGCTGGAGACCGTGGTGTATGCCTCGTGGAGTCGCGTCCAGGCCG 480582 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 ||||| ||||||| |||||| | | | | | || | |||| || |||||| Sbjct 480583 ACCTCCACTGCATGAGGGACCTCTATGGCCTGAGTGCGGACTGCAAGTACTTGATCAACC 480642 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCC 14040 | ||||||||||| ||||| |||| | |||||||||||| || | ||| ||| | Sbjct 480643 TTTGCGGGATGGATTTCCCCATCAAAATCAACCTGGAGATAGTCAGAAAGCTCAAGTCGT 480702 Query 14041 TGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC 14077 | ||| ||||| |||||| | ||| | ||||| Sbjct 480703 TAATGGGCGAGAACAACCTGGAAACGGAGAGGATGCC 480739 >seq3 Length=63406555 Score = 89.7 bits (98), Expect = 7e-13 Identities = 192/284 (68%), Gaps = 10/284 (4%) Strand=Plus/Minus Query 14268 TGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTAC 14327 ||| || | || || |||||||| ||||| ||||| ||||| || ||||| | || || Sbjct 38815491 TGGGTCAAAGATACCTACAGCCCAGACGAACACCTCTGGGCAACGCTGCAGCG--TGCAC 38815434 Query 14328 G--GGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385 ||| ||| || | ||| ||| |||||| |||| ||| |||||| ||| Sbjct 38815433 CATGGATGCCTGGCTTCACCCCTTGGCACCGCAAGTATGACATCTCAGACATGACTTCCA 38815374 Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACC 14445 | ||| | ||||||||||| || ||||||| ||| ||||||| ||||| | || Sbjct 38815373 TTGCCAGACTTGTCAAGTGGCAGGACCACGAGGGAGATGTCAAGAAGGGGGCGCCTTATG 38815314 Query 14446 CGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGT 14505 | |||||| || |||| | || |||| || | ||| | || ||| || | | Sbjct 38815313 CACCTTGCTCTGGAGTCCATCAGCGGGCTGTCTGTATTTATGGGGCTGGGGACCTGCACT 38815254 Query 14506 GGC---TGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 ||| || ||| || |||||||| |||||||| || ||| Sbjct 38815253 GGCTATTGCAGA---ACCATCACCTGTTGGCCAACAAATTTGAC 38815213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658653390984960