Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq24 105 5e-18 >seq6 Length=51880498 Score = 127 bits (140), Expect = 2e-24 Identities = 127/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || ||||| || || |||||||| ||||| || | ||||||||| ||||| ||||| Sbjct 43802740 AGTCCAGTGACATGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 43802681 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGCT 30060 || || || |||||||| |||||||||||||| | ||| || || ||||| ||| || || Sbjct 43802680 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAACTGGCAGGACAGCTCGCCGTTCACT 43802621 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||||| ||||| || | || ||||| || || || ||||| Sbjct 43802620 -ACGTAGAACTGGCAGAGAGCATGGCATGGGGGCAGGGCCAT 43802580 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || ||||||||||||||||| || || || || |||||||| ||||| | Sbjct 43799761 TGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCCTCCT 43799702 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | ||| ||| || |||||| ||| |||| |||| |||| || |||||||| | Sbjct 43799701 CTCTGGTTGAGAATCCAAGGCTGTCCAGAAATTCTCGGGAAGCGTTCGCATCCCAGATTT 43799642 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 | || ||||| |||| || ||||| | |||||||| || Sbjct 43799641 TCACTCCCTTGGCAGACAGTTCTTTAGCATTTGTGGATCC 43799602 >seq24 Length=26830293 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || |||||||| || | ||| || ||||| ||||||| | |||||| |||||| Sbjct 24359535 TTGAGTTCTCTGCTGAGCACAATGTTGATTCTGTCCTTCAGAGGCCGATTCTTCTCGGGG 24359476 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| | |||||| ||||||| |||||| || ||| Sbjct 24359475 ATGGAGAACCAGGTCTTCCGACCCATGATCACCAGGTTCTGTTTACCT 24359428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406258796166732