Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 158 1e-33 >seq6 Length=51880498 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || |||| |||||| || ||||| ||||| | |||||||| |||||||| | ||| Sbjct 43802568 GACCTTCCTCAGATGGCCCTGCCCCCATGCCATGCTCTCTGCCAGTTCTACGTAGTGAAC 43802627 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||| | || || | |||||||||||||| | || ||||| ||| Sbjct 43802628 GGCGAGCTGTCCTGCCAGTTGTACCAGAGGTCGGGAGACATGGGCCTGGGCGTGCCCTTC 43802687 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || ||||| |||||||| |||||||| || |||||| Sbjct 43802688 AACATTGCCAGCTACGCCCTGCTCACCTACATGATTGCGCATGTC 43802732 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| ||||| || ||||||||||| ||||| || | Sbjct 43802732 GACATGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCCAG 43802673 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||||||||| | || || | ||||||||||||||| || ||| | |||||||| Sbjct 43802672 GCCCATGTCTCCCGACCTCTGGTACAACTGGCAGGACAGCTCGCCGTTCACTACGTAGAA 43802613 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| | ||||| ||||| || |||||| |||| || || Sbjct 43802612 CTGGCAGAGAGCATGGCATGGGGGCAGGGCCATCTGAGGAAGGTC 43802568 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || || ||| ||||| |||||||| || ||| || | Sbjct 43799606 CCACAAATGCTAAAGAACTGTCTGCCAAGGGAGTGAAAATCTGGGATGCGAACGCTTCCC 43799665 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| |||||||||| | || ||| || | | |||||||| ||| |||| || || | Sbjct 43799666 GAGAATTTCTGGACAGCCTTGGATTCTCAACCAGAGAGGAGGGGGACCTGGGTCCAGTTT 43799725 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 43799726 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 43799759 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || || |||| ||| |||||||| Sbjct 43799759 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCCTCCTCT 43799700 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | || ||| || | |||||||||| ||||| || ||| || |||||||| ||| Sbjct 43799699 CTGGTTGAGAATCCAAGGCTGTCCAGAAATTCTCGGGAAGCGTTCGCATCCCAGATTTTC 43799640 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| || || || || || | || |||| Sbjct 43799639 ACTCCCTTGGCAGACAGTTCTTTAGCATTTGTGG 43799606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448204008219120