Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3 161 8e-35 seq6 113 4e-20 >seq3 Length=63406555 Score = 161 bits (178), Expect = 8e-35 Identities = 215/296 (73%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 1215 ACCCAGGATGAAGCAACACCACTTGGAGACCCC-GTTTCTATTAAGTGTTTTTTAGAAAC 1273 |||||||||||| | || || || | || || | |||| | || || | | || | | Sbjct 25948850 ACCCAGGATGAAA-AGCAGCAACTGAACACACCTGCTTCTTTAAAATGCTCTCTACAGTC 25948792 Query 1274 GCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACAT 1333 | || || || | |||| |||||||| ||| || || ||||||||||| || Sbjct 25948791 TTCCCAGGAGGTCTTGGTTGTGACATGGCAGAAAAAGAAGGCTGTGAGCCCAGAAAATAT 25948732 Query 1334 GGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAA 1393 || || || || || ||||||||||||| || ||||| || || | || || | || Sbjct 25948731 GGTGACCTTCAGCAAGAACCACGGGGTTGTCGTCCAGCCTGCCTATAGGGACAAGTTAAA 25948672 Query 1394 CATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGA 1453 ||| || |||| || || || ||| | || || |||||||||||||| || |||| || Sbjct 25948671 CATCACGCAGCTGGGGCTGCAGAACTCCACCATCACCTTCTGGAACACGACCCTGGAGGA 25948612 Query 1454 TGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 ||| |||||||||| |||| | ||||| |||||||| || |||||||| ||||||| Sbjct 25948611 TGAGGGGTGCTACATGTGTCTTTTTAATACTTTTGGGTCGGGGAAGATCTCAGGAA 25948556 >seq6 Length=51880498 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 10316001 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 10316060 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || ||||| Sbjct 10316061 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAT 10316120 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 10316121 ATCGCCCTGTGGATGACTGA 10316140 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 || ||||||||||| || | || ||||||||| | || || || || ||||| ||| Sbjct 43802728 TGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 43802669 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 |||||| | || ||||||||||| ||||| || ||||| ||||| | || || ||||| Sbjct 43802668 ATGTCTCCCGACCTCTGGTACAACTGGCAGGACAGCTCGCCGTTCACTACGTAGAACTG 43802610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414424158985444