Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq67 104 2e-17 seq42 104 2e-17 >seq67 Length=9509266 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| ||||| ||||| || || Sbjct 6398156 ATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCG 6398215 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| || || ||||| || || ||||| | || |||||||| Sbjct 6398216 GATACAATAGAAAATGTATAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 6398275 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| ||||| || |||||||| | || | |||| ||||||||| Sbjct 6398276 CAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGATTACAAC 6398335 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||| ||| Sbjct 6398336 ATTCAGAAGGAGTGCAC 6398352 >seq42 Length=18384968 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| ||||| || || ||| Sbjct 13799899 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 13799958 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| || || | || || || || Sbjct 13799959 GACACCATCGAAAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 13800018 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||| |||| || ||||| || | |||||| | ||| |||||| Sbjct 13800019 CAGCGTCTCATCTTTGCCAGCAAGCAGCTGGAGGATGGTCGCACTCTGTCCGACTACAAC 13800078 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 13800079 ATCCAGAAAGAGTCCAC 13800095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337966670773868