Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq42 140 8e-28 seq67 138 3e-27 seq6 134 3e-26 seq76 131 4e-25 seq49 123 6e-23 seq17 113 1e-19 seq40 105 2e-17 seq26 100 7e-16 seq58 96.9 8e-15 >seq42 Length=18384968 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| ||||| |||| ||||| |||| || ||| | ||||| Sbjct 13800110 AGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCC 13800051 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| | || ||||| || || || ||||| || || || || |||||||| Sbjct 13800050 TCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 13799991 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||||||| || ||||| || | ||||| ||| Sbjct 13799990 TGGATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTC 13799931 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||| || |||| ||| | ||||| Sbjct 13799930 TTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq67 Length=9509266 Score = 138 bits (152), Expect = 3e-27 Identities = 149/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||||||| || ||||| |||||| | || || || | |||||||| | ||| ||| Sbjct 6398373 AGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGG 6398314 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| ||||| |||| ||| || || || ||||| |||||| Sbjct 6398313 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCC 6398254 Query 225616 TTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || || ||||| ||| |||| ||| ||| || || || |||| || || || | || Sbjct 6398253 TTATCCTGGAT-TTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGT 6398195 Query 225675 GATCGTCTTGCCCGT 225689 ||| ||||||||||| Sbjct 6398194 GATGGTCTTGCCCGT 6398180 >seq6 Length=51880498 Score = 134 bits (148), Expect = 3e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||||||| || ||||| |||||||| || || || | ||||| || | |||| Sbjct 32416402 ACGGAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGATGAAGT 32416343 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| ||||| | || ||| || || || ||||| || Sbjct 32416342 TTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCC 32416283 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||| || ||| | ||| |||| ||| ||| || || || |||| || | |||| Sbjct 32416282 TTCCTTATCCTGGGT-TTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTA 32416224 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | || |||| ||| | ||||| Sbjct 32416223 GGGTGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | |||||| Sbjct 47505270 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 47505211 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || |||||||| || Sbjct 47505210 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTACCT 47505151 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||| ||| ||| ||||||||||| || |||||| || | ||||| ||| Sbjct 47505150 -GGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTC 47505092 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | ||||| || Sbjct 47505091 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATCTT 47505057 >seq76 Length=7797616 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| || || |||| ||||| || | || || | || || Sbjct 4980824 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTC 4980883 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || |||||||| || || |||||||| || Sbjct 4980884 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATC 4980943 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 4980944 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 4981003 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTAC 225724 |||||| |||| || || | ||| | |||||| | | ||||| Sbjct 4981004 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTGTCT-GTTAC 4981046 >seq49 Length=14824766 Score = 123 bits (136), Expect = 6e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 || |||| || ||||| || || |||| ||||| || | || || | || ||||| | Sbjct 11086303 CAGGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCA 11086244 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| || || ||||| || | || |||||||| || || ||||| || || |||| Sbjct 11086243 GCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGA 11086184 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| ||| |||||||||||| || |||||| || | ||||| ||||||| Sbjct 11086183 TCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGC 11086124 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||| || || | ||| | ||||| Sbjct 11086123 CAGTCAGGGTCTTCACGAAGATCTGCAT 11086096 >seq17 Length=35549867 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || ||||||| ||||| || | || || | |||||| Sbjct 30593103 AGGACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 30593044 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | | |||||||| || || |||||||| || Sbjct 30593043 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCC 30592984 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| | || || || | ||||| ||| Sbjct 30592983 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGGTC 30592924 Query 225682 TTGCCCGTCA 225691 |||| |||| Sbjct 30592923 TTGCTGGTCA 30592914 >seq40 Length=19049039 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||| Sbjct 15841330 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCT 15841271 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || |||||||| || || |||||||| || Sbjct 15841270 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 15841211 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || || || || | ||||| ||| Sbjct 15841210 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 15841151 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 15841150 TTGCCGGT 15841143 >seq26 Length=25362064 Score = 100 bits (110), Expect = 7e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| | || |||| ||||| || | ||| || ||||| Sbjct 23898024 CAGGACCAGGTGCAGGGTGGACTTCTTCTGGATGTTGTAGTCAGACAAGGTGTGGCCATC 23897965 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || | |||||||| || Sbjct 23897964 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGCTGCCTTCCTTATC 23897905 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||||||| | ||| ||| ||||||||||| || |||||| || Sbjct 23897904 TTGGATCATGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACCTC 23897857 >seq58 Length=12492363 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| | ||||| || || |||| ||||| || | || || Sbjct 9398034 CGCAGGCGCAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 9398093 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || | ||| || || ||||| || | || |||||||| || || ||| Sbjct 9398094 CGGCCATCTTCCAGTTCCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCT 9398153 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 ||||| || |||||||| ||| ||| ||||||||||| Sbjct 9398154 TCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 9398194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192371974352174