Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6 141 8e-29 seq24 105 5e-18 >seq6 Length=51880498 Score = 141 bits (156), Expect = 8e-29 Identities = 130/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || ||||| || || |||||||| ||||| || | ||||||||| ||||| |||||| Sbjct 43802740 AGTCCAGTGACATGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 43802681 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG-TCGCT 29832 || || || |||||||| || ||||||||||| | |||||| || ||||| ||| || || Sbjct 43802680 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAACTGGCAGGACAGCTCGCCGTTCACT 43802621 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||||| ||||| || | |||||||| || || |||||||| Sbjct 43802620 -ACGTAGAACTGGCAGAGAGCATGGCATGGGGGCAGGGCCAT 43802580 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||||||| ||||| || ||| ||| Sbjct 43799747 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCCTCCTCTCTGGTTGAGAAT 43799688 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||| ||| |||| |||| |||| || |||||||| || || ||||| | Sbjct 43799687 CCAAGGCTGTCCAGAAATTCTCGGGAAGCGTTCGCATCCCAGATTTTCACTCCCTTGGCA 43799628 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | |||||||| || Sbjct 43799627 GACAGTTCTTTAGCATTTGTGGATCC 43799602 >seq24 Length=26830293 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || |||||||| || | ||| | ||||| ||||||| | |||||| |||||| Sbjct 24359535 TTGAGTTCTCTGCTGAGCACAATGTTGATTCTGTCCTTCAGAGGCCGATTCTTCTCGGGG 24359476 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| | |||||| ||||||| |||||| |||||| Sbjct 24359475 ATGGAGAACCAGGTCTTCCGACCCATGATCACCAGGTTCTGTTTACCT 24359428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406111614862006