Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 5e-12 >seq9 Length=49469770 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| || || || || || || |||||||| |||||||||||||| ||||| |||||| Sbjct 15772016 TGGTACTCTGAAACCCGTTTCTCAAAGAAATTCGTTTTGCCTTCTAAAGAAATGTTTTCC 15772075 Query 4320 ATAAAATCAAACGGATT 4336 || |||||||| ||||| Sbjct 15772076 ATGAAATCAAAGGGATT 15772092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426995362165193